Publications by authors named "Andrew Binkowski"

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Precision therapeutic targeting of human cancer cell motility.
Li Xu, Ryan Gordon, Rebecca Farmer, Abhinandan Pattanayak, Andrew Binkowski

Nat Commun· June 2018

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Virtual high-throughput ligand screening.
T Andrew Binkowski, Wei Jiang, Benoit Roux, Wayne F Anderson, Andrzej Joachimiak

Methods Mol Biol· October 2014

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Sensor domain of histidine kinase KinB of Pseudomonas: a helix-swapped dimer.
Kemin Tan, Gekleng Chhor, T Andrew Binkowski, Robert P Jedrzejczak, Magdalena Makowska-Grzyska

J Biol Chem· May 2014

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Predicting HLA class I non-permissive amino acid residues substitutions.
T Andrew Binkowski, Susana R Marino, Andrzej Joachimiak

PLoS One· February 2013

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Bacillus anthracis inosine 5'-monophosphate dehydrogenase in action: the first bacterial series of structures of phosphate ion-, substrate-, and product-bound complexes.
Magdalena Makowska-Grzyska, Youngchang Kim, Ruiying Wu, Rosemarie Wilton, Deviprasad R Gollapalli, T Andrew Binkowski

Biochemistry· August 2012

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Structure of apo- and monometalated forms of NDM-1--a highly potent carbapenem-hydrolyzing metallo-β-lactamase.
Youngchang Kim, Christine Tesar, Joseph Mire, Robert Jedrzejczak, Andrew Binkowski

PLoS One· February 2012

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Structure of surface layer homology (SLH) domains from Bacillus anthracis surface array protein.
Justin Kern, Rosemarie Wilton, Rongguang Zhang, T Andrew Binkowski, Andrzej Joachimiak

J Biol Chem· July 2011

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Structure of transcription factor HetR required for heterocyst differentiation in cyanobacteria.
Youngchang Kim, Grazyna Joachimiak, Zi Ye, T Andrew Binkowski, Rongguang Zhang

Proc Natl Acad Sci U S A· June 2011

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Chapter 4. Predicting and characterizing protein functions through matching geometric and evolutionary patterns of binding surfaces.
Jie Liang, Yan-Yuan Tseng, Joseph Dundas, T Andrew Binkowski, Andrzej Joachimiak

Adv Protein Chem Struct Biol· February 2011

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A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair.
Mohan Babu, Natalia Beloglazova, Robert Flick, Chris Graham, Tatiana Skarina, Andrew Binkowski

Mol Microbiol· January 2011

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Assisted assignment of ligands corresponding to unknown electron density.
T Andrew Binkowski, Marianne Cuff, Boguslaw Nocek, Changsoo Chang, Andrzej Joachimiak

J Struct Funct Genomics· March 2010

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Large-scale evaluation of protein reductive methylation for improving protein crystallization.
Youngchang Kim, Pearl Quartey, Hui Li, Lour Volkart, Catherine Hatzos, T Andrew Binkowski

Nat Methods· October 2008

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Protein functional surfaces: global shape matching and local spatial alignments of ligand binding sites.
T Andrew Binkowski, Andrzej Joachimiak

BMC Struct Biol· October 2008

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The 1.38 A crystal structure of DmsD protein from Salmonella typhimurium, a proofreading chaperone on the Tat pathway.
Yang Qiu, Rongguang Zhang, T Andrew Binkowski, Valentina Tereshko, Andrzej Joachimiak

Proteins· May 2008

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Biochemical and structural characterization of a novel family of cystathionine beta-synthase domain proteins fused to a Zn ribbon-like domain.
Michael Proudfoot, Stephen A Sanders, Alex Singer, Rongguang Zhang, Greg Brown, Andrew Binkowski

J Mol Biol· January 2008

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Order independent structural alignment of circularly permuted proteins.
T Andrew Binkowski, Bhaskar DasGupta, Jie Liang

Conf Proc IEEE Eng Med Biol Soc· June 2007

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CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues.
Joe Dundas, Zheng Ouyang, Jeffery Tseng, Andrew Binkowski, Yaron Turpaz

Nucleic Acids Res· July 2006

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Protein surface analysis for function annotation in high-throughput structural genomics pipeline.
T Andrew Binkowski, Andrzej Joachimiak, Jie Liang

Protein Sci· December 2005

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pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins.
T Andrew Binkowski, Patrick Freeman, Jie Liang

Nucleic Acids Res· July 2004

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topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association.
Nathan O Stitziel, T Andrew Binkowski, Yan Yuan Tseng, Simon Kasif, Jie Liang

Nucleic Acids Res· January 2004

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Inferring functional relationships of proteins from local sequence and spatial surface patterns.
T Andrew Binkowski, Larisa Adamian, Jie Liang

J Mol Biol· September 2003

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CASTp: Computed Atlas of Surface Topography of proteins.
T Andrew Binkowski, Shapor Naghibzadeh, Jie Liang

Nucleic Acids Res· July 2003

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Higher-order interhelical spatial interactions in membrane proteins.
Larisa Adamian, Ronald Jackups, T Andrew Binkowski, Jie Liang

J Mol Biol· March 2003

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