Publications by authors named "Andrew D Farmer"

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A view of the pan-genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.).
Qihua Liang, María Muñoz-Amatriaín, Shengqiang Shu, Sassoum Lo, Xinyi Wu, Andrew D Farmer

Plant Genome· March 2024

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Genome assembly of Medicago truncatula accession SA27063 provides insight into spring black stem and leaf spot disease resistance.
Jacob R Botkin, Andrew D Farmer, Nevin D Young, Shaun J Curtin

BMC Genomics· February 2024

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Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium.
Jennifer L Clarke, Laurel D Cooper, Monica F Poelchau, Tanya Z Berardini, Justin Elser, Andrew D Farmer

Database (Oxford)· November 2023

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Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes.
Alan M Cleary, Andrew D Farmer

Nucleic Acids Res· July 2023

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Hiding in plain sight: Genome-wide recombination and a dynamic accessory genome drive diversity in f.sp. .
Amna Fayyaz, Guy Robinson, Peter L Chang, Dagnachew Bekele, Sultan Yimer, Andrew D Farmer

Proc Natl Acad Sci U S A· July 2023

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Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume.
Sergio Alan Cervantes-Pérez, Sandra Thibivilliers, Carole Laffont, Andrew D Farmer, Florian Frugier

Mol Plant· February 2023

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Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume.
Sergio Alan Cervantes-Pérez, Sandra Thibivilliers, Carole Laffont, Andrew D Farmer, Florian Frugier

Mol Plant· December 2022

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Ten simple rules for developing visualization tools in genomics.
Eloi Durant, Mathieu Rouard, Eric W Ganko, Cedric Muller, Alan M Cleary, Andrew D Farmer

PLoS Comput Biol· November 2022

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Alfalfa (Medicago sativa L.) pho2 mutant plants hyperaccumulate phosphate.
Susan S Miller, Melinda R Dornbusch, Andrew D Farmer, Raul Huertas, Juan J Gutierrez-Gonzalez

G3 (Bethesda)· May 2022

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Doing Genetic and Genomic Biology Using the Legume Information System and Associated Resources.
Sven Redsun, Sam Hokin, Connor T Cameron, Alan M Cleary, Joel Berendzen, Andrew D Farmer

Methods Mol Biol· March 2022

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Legacy genetics of in the peanut crop shows the profound benefits of international seed exchange.
David J Bertioli, Josh Clevenger, Ignacio J Godoy, H T Stalker, Shona Wood, Andrew D Farmer

Proc Natl Acad Sci U S A· September 2021

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The genome of a wild Medicago species provides insights into the tolerant mechanisms of legume forage to environmental stress.
Tianzuo Wang, Lifei Ren, Caihong Li, Di Zhang, Xiuxiu Zhang, Andrew D Farmer

BMC Biol· May 2021

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Expression Partitioning of Duplicate Genes at Single Cell Resolution in Roots.
Jeremy E Coate, Andrew D Farmer, John W Schiefelbein, Jeff J Doyle

Front Genet· November 2020

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A genome-wide association and meta-analysis reveal regions associated with seed size in cowpea [Vigna unguiculata (L.) Walp].
Sassoum Lo, María Muñoz-Amatriaín, Samuel A Hokin, Ndiaga Cisse, Philip A Roberts, Andrew D Farmer

Theor Appl Genet· November 2019

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The genome of cowpea (Vigna unguiculata [L.] Walp.).
Stefano Lonardi, María Muñoz-Amatriaín, Qihua Liang, Shengqiang Shu, Steve I Wanamaker, Andrew D Farmer

Plant J· June 2019

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The genome sequence of segmental allotetraploid peanut Arachis hypogaea.
David J Bertioli, Jerry Jenkins, Josh Clevenger, Olga Dudchenko, Dongying Gao, Andrew D Farmer

Nat Genet· May 2019

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Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L.).
Matthew W Blair, Andrés J Cortés, Andrew D Farmer, Wei Huang, Daniel Ambachew

PLoS One· June 2018

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A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes.
Jugpreet Singh, Scott R Kalberer, Vikas Belamkar, Teshale Assefa, Matthew N Nelson, Andrew D Farmer

Theor Appl Genet· February 2018

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Correction to: The transcriptome landscape of early maize meiosis.
Stefanie Dukowic-Schulze, Anitha Sundararajan, Joann Mudge, Thiruvarangan Ramaraj, Andrew D Farmer

BMC Plant Biol· January 2018

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Anilinopyrimidine Resistance in Is Linked to Mitochondrial Function.
Andreas Mosbach, Dominique Edel, Andrew D Farmer, Stephanie Widdison, Thierry Barchietto

Front Microbiol· November 2017

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Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes.
Peng Zhou, Kevin A T Silverstein, Thiruvarangan Ramaraj, Joseph Guhlin, Roxanne Denny, Andrew D Farmer

BMC Genomics· March 2017

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Small RNA profiles in soybean primary root tips under water deficit.
Yun Zheng, Vandana Hivrale, Xiaotuo Zhang, Babu Valliyodan, Christine Lelandais-Brière, Andrew D Farmer

BMC Syst Biol· December 2016

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Genomics-assisted characterization of a breeding collection of Apios americana, an edible tuberous legume.
Vikas Belamkar, Andrew D Farmer, Nathan T Weeks, Scott R Kalberer, William J Blackmon

Sci Rep· October 2016

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Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor.
R Varma Penmetsa, Noelia Carrasquilla-Garcia, Emily M Bergmann, Lisa Vance, Brenna Castro, Andrew D Farmer

New Phytol· September 2016

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Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control.
Rafael E Arango Isaza, Caucasella Diaz-Trujillo, Braham Dhillon, Andrea Aerts, Jean Carlier, Andrew D Farmer

PLoS Genet· August 2016

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