Publications by authors named "Andrew Link"

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A Time-Resolved Cryo-EM Study of Saccharomyces cerevisiae 80S Ribosome Protein Composition in Response to a Change in Carbon Source.
Ming Sun, Bingxin Shen, Wen Li, Parimal Samir, Christopher M Browne, Andrew J Link

Proteomics· January 2021

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Targeted Identification of Protein Interactions in Eukaryotic mRNA Translation.
Andrew J Link, Xinnan Niu, Connie M Weaver, Jennifer L Jennings, Dexter T Duncan

Proteomics· April 2020

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A cost-sensitive online learning method for peptide identification.
Xijun Liang, Zhonghang Xia, Ling Jian, Yongxiang Wang, Xinnan Niu, Andrew J Link

BMC Genomics· April 2020

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AS03-Adjuvanted H5N1 Avian Influenza Vaccine Modulates Early Innate Immune Signatures in Human Peripheral Blood Mononuclear Cells.
Leigh M Howard, Johannes B Goll, Travis L Jensen, Kristen L Hoek, Nripesh Prasad, Andrew J Link

J Infect Dis· May 2019

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Critical Role for Saccharomyces cerevisiae Asc1p in Translational Initiation at Elevated Temperatures.
Vincent R Gerbasi, Christopher M Browne, Parimal Samir, Bingxin Shen, Ming Sun, Andrew J Link

Proteomics· December 2018

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Identification of Changing Ribosome Protein Compositions using Mass Spectrometry.
Parimal Samir, Christopher M Browne, Rahul, Ming Sun, Bingxin Shen, Andrew J Link

Proteomics· October 2018

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l2 Multiple Kernel Fuzzy SVM-Based Data Fusion for Improving Peptide Identification.
Ling Jian, Zhonghang Xia, Xinnan Niu, Xijun Liang, Parimal Samir, Andrew J Link

IEEE/ACM Trans Comput Biol Bioinform· September 2017

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Cell-Based Systems Biology Analysis of Human AS03-Adjuvanted H5N1 Avian Influenza Vaccine Responses: A Phase I Randomized Controlled Trial.
Leigh M Howard, Kristen L Hoek, Johannes B Goll, Parimal Samir, Allison Galassie, Andrew J Link

PLoS One· August 2017

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Proteomics show antigen presentation processes in human immune cells after AS03-H5N1 vaccination.
Allison C Galassie, Johannes B Goll, Parimal Samir, Travis L Jensen, Kristen L Hoek, Andrew J Link

Proteomics· June 2017

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An adaptive classification model for peptide identification.
Xijun Liang, Zhonghang Xia, Ling Jian, Xinnan Niu, Andrew Link

BMC Genomics· September 2016

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Environmental Interactions and Epistasis Are Revealed in the Proteomic Responses to Complex Stimuli.
Parimal Samir, Rahul, James C Slaughter, Andrew J Link

PLoS One· May 2016

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A cell-based systems biology assessment of human blood to monitor immune responses after influenza vaccination.
Kristen L Hoek, Parimal Samir, Leigh M Howard, Xinnan Niu, Nripesh Prasad, Andrew J Link

PLoS One· December 2015

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Proteomic contributions to our understanding of vaccine and immune responses.
Allison C Galassie, Andrew J Link

Proteomics Clin Appl· December 2015

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Focus on Immunology and Proteomics.
Andrew J Link

Proteomics Clin Appl· December 2015

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Viral infection causes a shift in the self peptide repertoire presented by human MHC class I molecules.
Charles T Spencer, Jelena S Bezbradica, Mireya G Ramos, Chenoa D Arico, Stephanie B Conant, Andrew J Link

Proteomics Clin Appl· December 2015

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Analysis of protein composition using multidimensional chromatography and mass spectrometry.
Andrew J Link, Michael P Washburn

Curr Protoc Protein Sci· November 2014

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Skating crossovers on a motorized flywheel: a preliminary experimental design to test effect on speed and on crossovers.
Aynsley M Smith, David A Krause, Michael J Stuart, William J Montelpare, Matthew C Sorenson, Andrew A Link

J Strength Cond Res· December 2013

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Peptide identification based on fuzzy classification and clustering.
Xijun Liang, Zhonghang Xia, Xinnan Niu, Andrew J Link, Liping Pang

Proteome Sci· November 2013

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Sculpting MHC class II-restricted self and non-self peptidome by the class I Ag-processing machinery and its impact on Th-cell responses.
Charles T Spencer, Srdjan M Dragovic, Stephanie B Conant, Jennifer J Gray, Mu Zheng, Andrew J Link

Eur J Immunol· May 2013

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Discovering naturally processed antigenic determinants that confer protective T cell immunity.
Pavlo Gilchuk, Charles T Spencer, Stephanie B Conant, Timothy Hill, Jennifer J Gray, Andrew J Link

J Clin Invest· May 2013

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The yeast eukaryotic translation initiation factor 2B translation initiation complex interacts with the fatty acid synthesis enzyme YBR159W and endoplasmic reticulum membranes.
Christopher M Browne, Parimal Samir, J Scott Fites, Seth A Villarreal, Andrew J Link

Mol Cell Biol· March 2013

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A novel algorithm for validating peptide identification from a shotgun proteomics search engine.
Ling Jian, Xinnan Niu, Zhonghang Xia, Parimal Samir, Chiranthani Sumanasekera, Andrew J Link

J Proteome Res· March 2013

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A new associate editor for Proteomics.
Michael J Dunn, Andrew J Link

Proteomics· August 2012

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The sodium channel accessory subunit Navβ1 regulates neuronal excitability through modulation of repolarizing voltage-gated K⁺ channels.
Céline Marionneau, Yarimar Carrasquillo, Aaron J Norris, R Reid Townsend, Lori L Isom, Andrew J Link

J Neurosci· April 2012

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Trichloroacetic acid (TCA) precipitation of proteins.
Andrew J Link, Joshua LaBaer

Cold Spring Harb Protoc· August 2011

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