Publications by authors named "Andrew Severin"

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Development of High-Throughput Genomic Resources to Inform White-Tailed Deer Population and Disease Management.
David Navarro, Emily K Latch, Anaïs K Tallon, Caitlin N Ott-Conn, Randy W DeYoung, Andrew J Severin

Mol Ecol Resour· January 2026

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The Role of Nonsense-Mediated Decay in Alleviating Nonproductive RNAs Produced by Heat Stress-Induced Alternative Splicing in Arabidopsis.
Zhaoxia Li, Renu Srivastava, Stephen H Howell, Sivanandan Chudalayandi, Andrew Severin

Plant Cell Environ· December 2025

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Comparative Transcriptomic Analysis of Soybean Cyst Nematode Inbred Populations Non-adapted or Adapted on Soybean /-Mediated Resistance.
Khee Man Kwon, Rick E Masonbrink, Thomas R Maier, Michael N Gardner, Andrew J Severin

Phytopathology· October 2024

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A chromosome-level genome assembly of the disco clam, Ctenoides ales.
Kyle E McElroy, Rick Masonbrink, Sivanandan Chudalayandi, Andrew J Severin, Jeanne M Serb

G3 (Bethesda)· September 2024

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Chromosome-Level Assembly and Annotation of the Genome of the Endangered Giant Patagonian Bumble Bee Bombus dahlbomii.
Lican Martínez, Eduardo E Zattara, Marina P Arbetman, Carolina L Morales, Rick E Masonbrink, Andrew J Severin

Genome Biol Evol· July 2024

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Correction: The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes.
Rick Masonbrink, Tom R Maier, Usha Muppirala, Arun S Seetharam, Etienne Lord, Andrew J Severin

BMC Genomics· May 2024

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Spirochaete genome identified in red abalone sample represents a novel genus Haliotispira gen. nov. within the order .
Sharu Paul Sharma, Catherine M Purcell, John R Hyde, Andrew J Severin

Int J Syst Evol Microbiol· January 2024

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Maternal pre-conceptional glyphosate exposure impacts the offspring hepatic and ovarian proteome.
Gulnara Novbatova, Kelsey Timme, Andrew Severin, Maryam Sayadi, Aileen F Keating

Toxicol Sci· June 2023

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polishCLR: A Nextflow Workflow for Polishing PacBio CLR Genome Assemblies.
Jennifer Chang, Amanda R Stahlke, Sivanandan Chudalayandi, Benjamin D Rosen, Anna K Childers, Andrew J Severin

Genome Biol Evol· March 2023

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Pre-Conceptional Exposure to Glyphosate Affects the Maternal Hepatic and Ovarian Proteome.
Gulnara Novbatova, Kelsey Timme, Andrew Severin, Maryam Sayadi, Aileen F Keating

Toxicol Sci· November 2022

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PFOA-Induced Ovotoxicity Differs Between Lean and Obese Mice With Impacts on Ovarian Reproductive and DNA Damage Sensing and Repair Proteins.
Maria Estefanía González-Alvarez, Andrew Severin, Maryam Sayadi, Aileen F Keating

Toxicol Sci· November 2022

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Differential Transcriptomic Profiles Following Stimulation with Lipopolysaccharide in Intestinal Organoids from Dogs with Inflammatory Bowel Disease and Intestinal Mast Cell Tumor.
Dipak Kumar Sahoo, Dana C Borcherding, Lawrance Chandra, Albert E Jergens, Todd Atherly, Andrew J Severin

Cancers (Basel)· July 2022

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A repackaged CRISPR platform increases homology-directed repair for yeast engineering.
Deon Ploessl, Yuxin Zhao, Mingfeng Cao, Saptarshi Ghosh, Carmen Lopez, Andrew Severin

Nat Chem Biol· January 2022

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A chromosomal assembly of the soybean cyst nematode genome.
Rick E Masonbrink, Tom R Maier, Matthew Hudson, Andrew Severin, Thomas Baum

Mol Ecol Resour· October 2021

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A pseudomolecule assembly of the Rocky Mountain elk genome.
Rick E Masonbrink, David Alt, Darrell O Bayles, Paola Boggiatto, William Edwards, Andrew Severin

PLoS One· September 2021

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Systematic in vitro specificity profiling reveals nicking defects in natural and engineered CRISPR-Cas9 variants.
Karthik Murugan, Shravanti K Suresh, Arun S Seetharam, Andrew J Severin, Dipali G Sashital

Nucleic Acids Res· April 2021

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Sociality sculpts similar patterns of molecular evolution in two independently evolved lineages of eusocial bees.
Wyatt A Shell, Michael A Steffen, Hannah K Pare, Arun S Seetharam, Andrew J Severin

Commun Biol· February 2021

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The Gene Encodes a NOT1 Subunit of the CCR4-NOT Complex and Regulates Cell Patterning in Endosperm.
Hao Wu, Bryan C Gontarek, Gibum Yi, Brandon D Beall, Anjanasree K Neelakandan, Andrew J Severin

Plant Physiol· October 2020

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Detecting and correcting misclassified sequences in the large-scale public databases.
Hamid Bagheri, Andrew J Severin, Hridesh Rajan

Bioinformatics· September 2020

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CRISPR-Cas12a has widespread off-target and dsDNA-nicking effects.
Karthik Murugan, Arun S Seetharam, Andrew J Severin, Dipali G Sashital

J Biol Chem· April 2020

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Oral Treatments With Probiotics and Live Vaccine Induce Unique Changes in Gut Neurochemicals and Microbiome in Chickens.
Graham A J Redweik, Karrie Daniels, Andrew J Severin, Mark Lyte, Melha Mellata

Front Microbiol· January 2020

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Shared data science infrastructure for genomics data.
Hamid Bagheri, Usha Muppirala, Rick E Masonbrink, Andrew J Severin, Hridesh Rajan

BMC Bioinformatics· August 2019

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Heterodera glycines utilizes promiscuous spliced leaders and demonstrates a unique preference for a species-specific spliced leader over C. elegans SL1.
Stacey N Barnes, Rick E Masonbrink, Thomas R Maier, Arun Seetharam, Anoop S Sindhu, Andrew J Severin

Sci Rep· February 2019

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The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes.
Rick Masonbrink, Tom R Maier, Usha Muppirala, Arun S Seetharam, Etienne Lord, Andrew J Severin

BMC Genomics· February 2019

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SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines).
Rick Masonbrink, Tom R Maier, Arun S Seetharam, Parijat S Juvale, Levi Baber, Andrew J Severin

Database (Oxford)· January 2019

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