Publications by authors named "Andrew Spakowitz"

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Leveraging inhomogeneous binding of incompatible constituents for adaptive copolymer self-assembly.
Thomas M Habte, Andrew J Spakowitz

Soft Matter· December 2025

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Influence of dipolar solvent fluctuations on polyelectrolyte thermodynamics and complex coacervation.
Michael Beckinghausen, Andrew J Spakowitz

J Chem Phys· December 2025

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Physical models reveal indirect reader protein interactions that facilitate epigenetic crosstalk.
Joseph G Wakim, Andrew J Spakowitz

Proc Natl Acad Sci U S A· November 2025

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Tuning viscoelasticity of dynamic covalent hydrogels for human tissue modeling.
Narelli de Paiva Narciso, Fotis Christakopoulos, Michelle S Huang, Neil J Baugh, Carla Huerta-López, Andrew Spakowitz

bioRxiv· October 2025

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Kinetic organization of the genome revealed by ultraresolution multiscale live imaging.
Joo Lee, Liang-Fu Chen, Simon Gaudin, Kavvya Gupta, Ana Novacic, Andrew Spakowitz

Science· September 2025

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Nucleosome placement and polymer mechanics explain genomic contacts on 100 kb scales.
John Corrette, Jiachun Li, Hanjuan Shao, Praveen Krishna Veerasubramanian, Andrew Spakowitz

Nucleic Acids Res· July 2025

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High-resolution dynamic imaging of chromatin DNA communication using Oligo-LiveFISH.
Yanyu Zhu, Ashwin Balaji, Mengting Han, Leonid Andronov, Anish R Roy, Andrew J Spakowitz

Cell· June 2025

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Nucleosome placement and polymer mechanics explain genomic contacts on 100kbp scales.
John Corrette, Jiachun Li, Hanjuan Shao, Praveen Krishna Veerasubramanian, Andrew Spakowitz

bioRxiv· May 2025

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Kinetic organization of the genome revealed by ultra-resolution, multiscale live imaging.
Joo Lee, Liang-Fu Chen, Simon Gaudin, Kavvya Gupta, Andrew Spakowitz

bioRxiv· April 2025

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Cell tumbling enhances stem cell differentiation in hydrogels via nuclear mechanotransduction.
Manish Ayushman, Georgios Mikos, Xinming Tong, Sauradeep Sinha, Eunice Lopez-Fuentes, Andrew Spakowitz

Nat Mater· February 2025

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Modeling DNA methyltransferase function to predict epigenetic correlation patterns in healthy and cancer cells.
Ariana Y Tse, Andrew J Spakowitz

Proc Natl Acad Sci U S A· January 2025

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The lysogenic filamentous bacteriophage phage Pf slows mucociliary transport.
Elizabeth B Burgener, Pamela C Cai, Michael J Kratochvil, Laura S Rojas-Hernandez, Nam Soo Joo, Andrew J Spakowitz

PNAS Nexus· September 2024

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Local changes in protein filament properties drive large-scale membrane transformations involved in endosome tethering and fusion.
Ashesh Ghosh, Andrew J Spakowitz

Soft Matter· August 2024

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Determining mesoscale chromatin structure parameters from spatially correlated cleavage data using a coarse-grained oligonucleosome model.
Ariana Brenner Clerkin, Nicole Pagane, Devany W West, Andrew J Spakowitz, Viviana I Risca

bioRxiv· July 2024

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Air-liquid intestinal cell culture allows rheological characterization of intestinal mucus.
Pamela C Cai, Margaret Braunreuther, Audrey Shih, Andrew J Spakowitz, Gerald G Fuller

APL Bioeng· June 2024

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Physical modeling of nucleosome clustering in euchromatin resulting from interactions between epigenetic reader proteins.
Joseph G Wakim, Andrew J Spakowitz

Proc Natl Acad Sci U S A· June 2024

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Effect of local active fluctuations on structure and dynamics of flexible biopolymers.
Sayantan Dutta, Ashesh Ghosh, Andrew J Spakowitz

Soft Matter· February 2024

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Leveraging polymer modeling to reconstruct chromatin connectivity from live images.
Sayantan Dutta, Ashesh Ghosh, Alistair N Boettiger, Andrew J Spakowitz

Biophys J· September 2023

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Closing the loop between microstructure and charge transport in conjugated polymers by combining microscopy and simulation.
Luke Balhorn, Quinn MacPherson, Karen C Bustillo, Christopher J Takacs, Andrew J Spakowitz

Proc Natl Acad Sci U S A· November 2022

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Semiflexible polymer solutions. II. Fluctuations and Frank elastic constants.
Ashesh Ghosh, Quinn MacPherson, Zhen-Gang Wang, Andrew J Spakowitz

J Chem Phys· October 2022

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Active and thermal fluctuations in multi-scale polymer structure and dynamics.
Ashesh Ghosh, Andrew J Spakowitz

Soft Matter· September 2022

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Rheological Characterization and Theoretical Modeling Establish Molecular Design Rules for Tailored Dynamically Associating Polymers.
Pamela C Cai, Bo Su, Lei Zou, Matthew J Webber, Sarah C Heilshorn, Andrew J Spakowitz

ACS Cent Sci· September 2022

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Biochemical, biophysical, and immunological characterization of respiratory secretions in severe SARS-CoV-2 infections.
Michael J Kratochvil, Gernot Kaber, Sally Demirdjian, Pamela C Cai, Elizabeth B Burgener, Andrew J Spakowitz

JCI Insight· June 2022

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Coarse-grained modeling reveals the impact of supercoiling and loop length in DNA looping kinetics.
Charles H Starr, Zev Bryant, Andrew J Spakowitz

Biophys J· May 2022

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Biochemical, Biophysical, and Immunological Characterization of Respiratory Secretions in Severe SARS-CoV-2 (COVID-19) Infections.
Michael J Kratochvil, Gernot Kaber, Sally Demirdjian, Pamela C Cai, Elizabeth B Burgener, Andrew J Spakowitz

medRxiv· April 2022

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