Publications by authors named "Angela Oliveira Pisco"

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Mouse lemur cell atlas informs primate genes, physiology and disease.
Camille Ezran, Shixuan Liu, Stephen Chang, Jingsi Ming, Lisbeth A Guethlein, Angela Oliveira Pisco

Nature· August 2025

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A molecular cell atlas of mouse lemur, an emerging model primate.

Nature· August 2025

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Defining and benchmarking open problems in single-cell analysis.
Malte D Luecken, Scott Gigante, Daniel B Burkhardt, Robrecht Cannoodt, Daniel C Strobl, Angela Oliveira Pisco

Nat Biotechnol· July 2025

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Single-cell analysis reveals ESX-1-mediated accumulation of permissive macrophages in infected mouse lungs.
Weihao Zheng, Michael Borja, Leah C Dorman, Jonathan Liu, Andy Zhou, Angela Oliveira Pisco

Sci Adv· January 2025

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Consensus prediction of cell type labels in single-cell data with popV.
Can Ergen, Galen Xing, Chenling Xu, Martin Kim, Michael Jayasuriya, Angela Oliveira Pisco

Nat Genet· December 2024

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A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors.
Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordão Bragantini, Sarah Ancheta, Angela Oliveira Pisco

Cell· November 2024

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Single-cell analysis of breast cancer metastasis reveals epithelial-mesenchymal plasticity signatures associated with poor outcomes.
Juliane Winkler, Weilun Tan, Catherine Mm Diadhiou, Christopher S McGinnis, Aamna Abbasi, Angela Oliveira Pisco

J Clin Invest· September 2024

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Defining and benchmarking open problems in single-cell analysis.
Malte D Luecken, Scott Gigante, Daniel B Burkhardt, Robrecht Cannoodt, Daniel C Strobl, Angela Oliveira Pisco

Res Sq· April 2024

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scDiffCom: a tool for differential analysis of cell-cell interactions provides a mouse atlas of aging changes in intercellular communication.
Cyril Lagger, Eugen Ursu, Anaïs Equey, Roberto A Avelar, Angela Oliveira Pisco

Nat Aging· November 2023

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Single-nuclei characterization of pervasive transcriptional signatures across organs in response to COVID-19.

Elife· October 2023

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Research software engineering accelerates the translation of biomedical research for health.
David Horsfall, Jonah Cool, Simon Hettrick, Angela Oliveira Pisco, Neil Chue Hong

Nat Med· June 2023

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Aging Fly Cell Atlas identifies exhaustive aging features at cellular resolution.
Tzu-Chiao Lu, Maria Brbić, Ye-Jin Park, Tyler Jackson, Jiaye Chen, Angela Oliveira Pisco

Science· June 2023

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A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants.
Jack Albright, Eran Mick, Estella Sanchez-Guerrero, Jack Kamm, Anthea Mitchell, Angela Oliveira Pisco

mSystems· February 2023

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Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing.
Jonathan Liu, Vanessa Tran, Venkata Naga Pranathi Vemuri, Ashley Byrne, Michael Borja, Angela Oliveira Pisco

Life Sci Alliance· January 2023

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The hepatic integrated stress response suppresses the somatotroph axis to control liver damage in nonalcoholic fatty liver disease.
Rika Ohkubo, Wei-Chieh Mu, Chih-Ling Wang, Zehan Song, Marine Barthez, Angela Oliveira Pisco

Cell Rep· December 2022

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Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data.
Martin Jinye Zhang, Kangcheng Hou, Kushal K Dey, Saori Sakaue, Karthik A Jagadeesh, Angela Oliveira Pisco

Nat Genet· October 2022

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Dynamical Systems Model of RNA Velocity Improves Inference of Single-cell Trajectory, Pseudo-time and Gene Regulation.
Ruishan Liu, Angela Oliveira Pisco, Emelie Braun, Sten Linnarsson, James Zou

J Mol Biol· August 2022

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Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children.
Eran Mick, Alexandra Tsitsiklis, Natasha Spottiswoode, Saharai Caldera, Paula Hayakawa Serpa, Angela Oliveira Pisco

Nat Commun· July 2022

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The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans.

Science· May 2022

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Transcriptomic profiling of blood from autoimmune hepatitis patients reveals potential mechanisms with implications for management.
Michele May-Sien Tana, Arielle Klepper, Amy Lyden, Angela Oliveira Pisco, Maira Phelps

PLoS One· April 2022

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Molecular hallmarks of heterochronic parabiosis at single-cell resolution.
Róbert Pálovics, Andreas Keller, Nicholas Schaum, Weilun Tan, Tobias Fehlmann, Angela Oliveira Pisco

Nature· March 2022

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Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly.
Hongjie Li, Jasper Janssens, Maxime De Waegeneer, Sai Saroja Kolluru, Kristofer Davie, Angela Oliveira Pisco

Science· March 2022

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Leveraging the Cell Ontology to classify unseen cell types.
Sheng Wang, Angela Oliveira Pisco, Aaron McGeever, Maria Brbic, Marinka Zitnik

Nat Commun· September 2021

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Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults.
Eran Mick, Alexandra Tsitsiklis, Natasha Spottiswoode, Saharai Caldera, Paula Hayakawa Serpa, Angela Oliveira Pisco

Res Sq· August 2021

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Single-Cell Analysis for Whole-Organism Datasets.
Angela Oliveira Pisco, Bruno Tojo, Aaron McGeever

Annu Rev Biomed Data Sci· July 2021

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