Publications by authors named "Angelo Pavesi"

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Systematic Detection of Alternative Open Reading Frames (altORFs) in Cancer Driver Genes.
Angelo Pavesi

J Mol Evol· November 2025

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Covariation of Amino Acid Substitutions in the HIV-1 Envelope Glycoprotein gp120 and the Antisense Protein ASP Associated with Coreceptor Usage.
Angelo Pavesi, Fabio Romerio

Viruses· February 2025

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Covariation of amino acid substitutions in the HIV-1 envelope glycoprotein gp120 and the antisense protein ASP associated with coreceptor usage.
Angelo Pavesi, Fabio Romerio

bioRxiv· January 2025

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Functional characterization of archaic-specific variants in mitonuclear genes: insights from comparative analysis in S. cerevisiae.
Serena Aneli, Camilla Ceccatelli Berti, Alexandru Ionut Gilea, Giovanni Birolo, Giacomo Mutti, Angelo Pavesi

Hum Mol Genet· June 2024

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Creation of the HIV-1 antisense gene coincided with the emergence of the pandemic group M and is associated with faster disease progression.
Angelo Pavesi, Fabio Romerio

Microbiol Spectr· February 2024

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Different Patterns of Codon Usage and Amino Acid Composition across Primate Lentiviruses.
Angelo Pavesi, Fabio Romerio

Viruses· July 2023

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Computational methods for inferring location and genealogy of overlapping genes in virus genomes: approaches and applications.
Angelo Pavesi

Curr Opin Virol· February 2022

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Extending the Coding Potential of Viral Genomes with Overlapping Antisense ORFs: A Case for the De Novo Creation of the Gene Encoding the Antisense Protein ASP of HIV-1.
Angelo Pavesi, Fabio Romerio

Viruses· January 2022

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Prediction of two novel overlapping ORFs in the genome of SARS-CoV-2.
Angelo Pavesi

Virology· October 2021

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Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution.
Irwin Jungreis, Chase W Nelson, Zachary Ardern, Yaara Finkel, Nevan J Krogan, Angelo Pavesi

Virology· June 2021

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Origin, Evolution and Stability of Overlapping Genes in Viruses: A Systematic Review.
Angelo Pavesi

Genes (Basel)· May 2021

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New insights into the evolutionary features of viral overlapping genes by discriminant analysis.
Angelo Pavesi

Virology· July 2020

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Asymmetric evolution in viral overlapping genes is a source of selective protein adaptation.
Angelo Pavesi

Virology· June 2019

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Overlapping genes and the proteins they encode differ significantly in their sequence composition from non-overlapping genes.
Angelo Pavesi, Alberto Vianelli, Nicola Chirico, Yiming Bao, Olga Blinkova

PLoS One· March 2019

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Different patterns of codon usage in the overlapping polymerase and surface genes of hepatitis B virus suggest a de novo origin by modular evolution.
Angelo Pavesi

J Gen Virol· December 2015

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Prediction of the determinants of thermal stability by linear discriminant analysis: the case of the glutamate dehydrogenase protein family.
Angelo Pavesi

J Theor Biol· September 2014

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Viral proteins originated de novo by overprinting can be identified by codon usage: application to the "gene nursery" of Deltaretroviruses.
Angelo Pavesi, Gkikas Magiorkinis, David G Karlin

PLoS Comput Biol· February 2014

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Comparative genomics of the genus Bifidobacterium.
Francesca Bottacini, Duccio Medini, Angelo Pavesi, Francesca Turroni, Elena Foroni

Microbiology (Reading)· November 2010

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Pattern of nucleotide substitution in the overlapping nonstructural genes of influenza A virus and implication for the genetic diversity of the H5N1 subtype.
Angelo Pavesi

Gene· November 2007

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Origin and evolution of overlapping genes in the family Microviridae.
Angelo Pavesi

J Gen Virol· April 2006

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Utility of JC polyomavirus in tracing the pattern of human migrations dating to prehistoric times.
Angelo Pavesi

J Gen Virol· May 2005

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Detecting Traces of Prehistoric Human Migrations by Geographic Synthetic Maps of Polyomavirus JC.
Angelo Pavesi

J Mol Evol· March 2004

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African origin of polyomavirus JC and implications for prehistoric human migrations.
Angelo Pavesi

J Mol Evol· May 2003

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Brief communication: coexistence of two distinct patterns in the surname structure of Sicily.
Angelo Pavesi, Paola Pizzetti, Enzo Siri, Enzo Lucchetti, Franco Conterio

Am J Phys Anthropol· February 2003

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