Publications by authors named "Anne Alvarez"

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Optimal Reference Gene Selection and Potential Target Gene Identification During pv. - Infection.
Shu-Cheng Chuang, Shefali Dobhal, Teresita D Amore, Anne M Alvarez, Mohammad Arif

Methods Protoc· July 2025

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sp. nov., pectinolytic bacterium isolated from pineapple ().
Shefali Dobhal, Nicole Hugouvieux-Cotte-Pattat, Dario Arizala, Gamze Boluk Sari, Shu-Cheng Chuang, Anne M Alvarez

Int J Syst Evol Microbiol· June 2025

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spp. Infecting Araceae and Araliaceae: Taxonomy, Phylogeny, and Potential Virulence Mechanisms.
Shu-Cheng Chuang, Shefali Dobhal, Lisa M Keith, Anne M Alvarez, Mohammad Arif

Biology (Basel)· June 2025

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Development and validation of genome-informed and multigene-based qPCR and LAMP assays for accurate detection of : a critical quarantine pathogen threatening the potato industry.
Shefali Dobhal, Gem Santillana, Michael J Stulberg, Dario Arizala, Anne M Alvarez

Microbiol Spectr· January 2025

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sp. nov., pectinolytic bacterium isolated from pineapple ().
Shefali Dobhal, Nicole Hugouvieux-Cotte-Pattat, Dario Arizala, Gamze Boluk Sari, Shu-Cheng Chuang, Anne M Alvarez

bioRxiv· October 2024

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Strains Isolated from Hosts in the Family Araceae Reveal Diverse Phylogenetic Relationships and Origins.
Shu-Cheng Chuang, Shefali Dobhal, Kanak Pal, Teresita D Amore, Anne M Alvarez

Phytopathology· August 2024

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Three new species, sp. nov., sp. nov., and sp. nov., isolated from the Araceae family.
Shu-Cheng Chuang, Shefali Dobhal, Anne M Alvarez, Mohammad Arif

Front Microbiol· April 2024

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Exploring taxonomic and functional microbiome of Hawaiian stream and spring irrigation water systems using Illumina and Oxford Nanopore sequencing platforms.
Diksha Klair, Shefali Dobhal, Amjad Ahmad, Zohaib Ul Hassan, Jensen Uyeda, Anne M Alvarez

Front Microbiol· February 2023

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Loop-mediated isothermal amplification (LAMP) assay for specific and rapid detection of Dickeya fangzhongdai targeting a unique genomic region.
Anuhea DeLude, Riley Wells, Sherine Boomla, Shu-Cheng Chuang, Frank Urena, Anne M Alvarez

Sci Rep· November 2022

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Elevation of subsp. to species level as sp. nov., merging and re-classification of subsp. and subsp. as sp. nov. based on complete genome analyses.
Dario Arizala, Shefali Dobhal, Anne M Alvarez, Mohammad Arif

Int J Syst Evol Microbiol· September 2022

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Development of a multiplex TaqMan qPCR targeting unique genomic regions for the specific and sensitive detection of Pectobacterium species and P. parmentieri.
Dario Arizala, Shefali Dobhal, Brooke Babler, Alex B Crockford, Renee A Rioux, Anne M Alvarez

J Appl Microbiol· April 2022

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Genome-informed loop-mediated isothermal amplification assay for specific detection of Pectobacterium parmentieri in infected potato tissues and soil.
Ryan Domingo, Cristian Perez, Diksha Klair, Huong Vu, Alika Candelario-Tochiki, Anne M Alvarez

Sci Rep· November 2021

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Genomic and Phenotypic Biology of Novel Strains of Isolated From Pineapple and Taro in Hawaii: Insights Into Genome Plasticity, Pathogenicity, and Virulence Determinants.
Gamze Boluk, Dario Arizala, Shefali Dobhal, Jingxin Zhang, John Hu, Anne M Alvarez

Front Plant Sci· August 2021

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Multiplex recombinase polymerase amplification assay developed using unique genomic regions for rapid on-site detection of genus Clavibacter and C. nebraskensis.
Adriana Larrea-Sarmiento, James P Stack, Anne M Alvarez, Mohammad Arif

Sci Rep· June 2021

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Taxonomy and Phylogenetic Research on Ralstonia solanacearum Species Complex: A Complex Pathogen with Extraordinary Economic Consequences.
Sujan Paudel, Shefali Dobhal, Anne M Alvarez, Mohammad Arif

Pathogens· October 2020

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Genome-Informed Recombinase Polymerase Amplification Assay Coupled with a Lateral Flow Device for In-Field Detection of Species.
Gamze Boluk, Shefali Dobhal, Alex B Crockford, Michael Melzer, Anne M Alvarez

Plant Dis· August 2020

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Synergetic effect of non-complementary 5' AT-rich sequences on the development of a multiplex TaqMan real-time PCR for specific and robust detection of Clavibacter michiganensis and C. michiganensis subsp. nebraskensis.
Adriana Larrea-Sarmiento, Anne M Alvarez, James P Stack, Mohammad Arif

PLoS One· February 2020

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Phylogenetic Analyses of Xanthomonads Causing Bacterial Leaf Spot of Tomato and Pepper: Revealed Homologous Populations Despite Distant Geographical Distribution.
Upasana Dhakal, Shefali Dobhal, Anne M Alvarez, Mohammad Arif

Microorganisms· October 2019

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Genome-informed diagnostics for specific and rapid detection of Pectobacterium species using recombinase polymerase amplification coupled with a lateral flow device.
Firas A Ahmed, Adriana Larrea-Sarmiento, Anne M Alvarez, Mohammad Arif

Sci Rep· October 2018

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Development of a genome-informed loop-mediated isothermal amplification assay for rapid and specific detection of Xanthomonas euvesicatoria.
Adriana Larrea-Sarmiento, Upasana Dhakal, Gamze Boluk, Lilly Fatdal, Anne Alvarez

Sci Rep· September 2018

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Development of a Loop-Mediated Isothermal Amplification Assay for the Detection of Dickeya spp.
Jarred Yasuhara-Bell, Glorimar Marrero, Mohammad Arif, Asoka de Silva, Anne M Alvarez

Phytopathology· November 2017

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Antibacterial Effect of Potassium Tetraborate Tetrahydrate against Soft Rot Disease Agent in Tomato.
Firas A Ahmed, Mohammad Arif, Anne M Alvarez

Front Microbiol· September 2017

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Specific detection of Pectobacterium carotovorum by loop-mediated isothermal amplification.
Jarred Yasuhara-Bell, Glorimar Marrero, Asoka De Silva, Anne M Alvarez

Mol Plant Pathol· December 2016

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The U.S. Culture Collection Network Lays the Foundation for Progress in Preservation of Valuable Microbial Resources.
Kevin McCluskey, Anne Alvarez, Rick Bennett, Deepak Bokati, Kyria Boundy-Mills

Phytopathology· June 2016

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Detection of Goss's Wilt Pathogen Clavibacter michiganensis subsp. nebraskensis in Maize by Loop-Mediated Amplification.
Jarred Yasuhara-Bell, Asoka de Silva, Scott A Heuchelin, Jennifer L Chaky, Anne M Alvarez

Phytopathology· March 2016

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