Publications by authors named "Anne Carpenter"

Claim this Profile
T
The OASIS Consortium: integrating multi-omics technologies to transform chemical safety assessment.
David Rouquié, Andreas Bender, Jaime Cheah, Christine E Crute, Deidre Dalmas, Anne E Carpenter

Toxicol Sci· December 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
N
nELISA: a high-throughput, high-plex platform enables quantitative profiling of the inflammatory secretome.
Milad Dagher, Grant Ongo, Nathaniel Robichaud, Jinglin Kong, Woojong Rho, Anne E Carpenter

Nat Methods· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Alternate dyes for image-based profiling assays.
Suganya Sivagurunathan, Patrick Byrne, Alán F Muñoz, John Arevalo, Anne E Carpenter

SLAS Discov· October 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
cubic: CUDA-accelerated 3D Bioimage Computing.
Alexandr A Kalinin, Anne E Carpenter, Shantanu Singh, Matthew J O'Meara

ArXiv· October 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Morphological map of under- and overexpression of genes in human cells.
Srinivas Niranj Chandrasekaran, Eric Alix, John Arevalo, Adriana Borowa, Patrick J Byrne, Anne E Carpenter

Nat Methods· August 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Progress and new challenges in image-based profiling.
Erik Serrano, John Peters, Jesko Wagner, Rebecca E Graham, Zhenghao Chen, Anne E Carpenter

ArXiv· August 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
L
Live-cell painting: Image-based profiling in live cells using acridine orange.
Fernanda Garcia-Fossa, Thaís Moraes-Lacerda, Mariana Rodrigues-da-Silva, Barbara Diaz-Rohrer, Shantanu Singh, Anne E Carpenter

Mol Biol Cell· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Combining phenomics with transcriptomics reveals cell-type-specific morphological and molecular signatures of the 22q11.2 deletion.
Matthew Tegtmeyer, Dhara Liyanage, Yu Han, Kathryn B Hebert, Ruifan Pei, Anne E Carpenter

Nat Commun· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
F
Foreground-aware Virtual Staining for Accurate 3D Cell Morphological Profiling.
Alexandr A Kalinin, Paula Llanos, Theresa Maria Sommer, Giovanni Sestini, Xinhai Hou, Anne E Carpenter

ArXiv· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
cp_measure: API-first feature extraction for image-based profiling workflows.
Alán F Muñoz, Tim Treis, Alexandr A Kalinin, Shatavisha Dasgupta, Fabian Theis, Anne E Carpenter

ArXiv· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A versatile information retrieval framework for evaluating profile strength and similarity.
Alexandr A Kalinin, John Arevalo, Erik Serrano, Loan Vulliard, Hillary Tsang, Anne E Carpenter

Nat Commun· June 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Machine Learning for Toxicity Prediction Using Chemical Structures: Pillars for Success in the Real World.
Srijit Seal, Manas Mahale, Miguel García-Ortegón, Chaitanya K Joshi, Layla Hosseini-Gerami, Anne E Carpenter

Chem Res Toxicol· May 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
Reproducible image-based profiling with Pycytominer.
Erik Serrano, Srinivas Niranj Chandrasekaran, Dave Bunten, Kenneth I Brewer, Jenna Tomkinson, Anne E Carpenter

Nat Methods· April 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A genome-wide atlas of human cell morphology.
Meraj Ramezani, Erin Weisbart, Julia Bauman, Avtar Singh, John Yong, Anne E Carpenter

Nat Methods· March 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Cell Painting: a decade of discovery and innovation in cellular imaging.
Srijit Seal, Maria-Anna Trapotsi, Ola Spjuth, Shantanu Singh, Jordi Carreras-Puigvert, Anne E Carpenter

Nat Methods· February 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Author Correction: Cell Painting: a decade of discovery and innovation in cellular imaging.
Srijit Seal, Maria-Anna Trapotsi, Ola Spjuth, Shantanu Singh, Jordi Carreras-Puigvert, Anne E Carpenter

Nat Methods· February 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Cell Painting for cytotoxicity and mode-of-action analysis in primary human hepatocytes.
Jessica D Ewald, Katherine L Titterton, Alex Bäuerle, Alex Beatson, Daniil A Boiko, Anne E Carpenter

bioRxiv· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
MorphoDiff: Cellular Morphology Painting with Diffusion Models.
Zeinab Navidi, Jun Ma, Esteban A Miglietta, Le Liu, Anne E Carpenter

bioRxiv· December 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Pervasive mislocalization of pathogenic coding variants underlying human disorders.
Jessica Lacoste, Marzieh Haghighi, Shahan Haider, Chloe Reno, Zhen-Yuan Lin, Anne E Carpenter

Cell· November 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning.
Robert van Dijk, John Arevalo, Mehrtash Babadi, Anne E Carpenter, Shantanu Singh

PLoS Comput Biol· November 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Combining NeuroPainting with transcriptomics reveals cell-type-specific morphological and molecular signatures of the 22q11.2 deletion.
Matthew Tegtmeyer, Dhara Liyanage, Yu Han, Kathryn B Hebert, Ruifan Pei, Anne E Carpenter

bioRxiv· November 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Cell Painting Gallery: an open resource for image-based profiling.
Erin Weisbart, Ankur Kumar, John Arevalo, Anne E Carpenter, Beth A Cimini

Nat Methods· October 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A postdoctoral training program in bioimage analysis.
Beth A Cimini, Callum Tromans-Coia, David R Stirling, Suganya Sivagurunathan, Rebecca A Senft, Anne E Carpenter

Mol Biol Cell· September 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
L
Live Cell Painting: image-based profiling in live cells using Acridine Orange.
Fernanda Garcia-Fossa, Thaís Moraes-Lacerda, Mariana Rodrigues-da-Silva, Barbara Diaz-Rohrer, Shantanu Singh, Anne E Carpenter

bioRxiv· August 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning.
Robert van Dijk, John Arevalo, Mehrtash Babadi, Anne E Carpenter, Shantanu Singh

bioRxiv· July 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis