Publications by authors named "Erin Weisbart"

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Anomaly detection for high-content image-based phenotypic cell profiling.
Alon Shpigler, Naor Kolet, Shahar Golan, Erin Weisbart, Assaf Zaritsky

Cell Syst· November 2025

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Cells stably expressing shRNA against MYO10 display altered cell motility.
Joanna A Mas, Chase E Cristella, Vu Hao M N Phan, Lillian S Wendt, Charlotte A Rose, Erin Weisbart

MicroPubl Biol· October 2025

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Morphological map of under- and overexpression of genes in human cells.
Srinivas Niranj Chandrasekaran, Eric Alix, John Arevalo, Adriana Borowa, Patrick J Byrne, Erin Weisbart

Nat Methods· August 2025

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Reproducible image-based profiling with Pycytominer.
Erik Serrano, Srinivas Niranj Chandrasekaran, Dave Bunten, Kenneth I Brewer, Jenna Tomkinson, Erin Weisbart

Nat Methods· April 2025

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A genome-wide atlas of human cell morphology.
Meraj Ramezani, Erin Weisbart, Julia Bauman, Avtar Singh, John Yong

Nat Methods· March 2025

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Cell Painting for cytotoxicity and mode-of-action analysis in primary human hepatocytes.
Jessica D Ewald, Katherine L Titterton, Alex Bäuerle, Alex Beatson, Daniil A Boiko, Erin Weisbart

bioRxiv· January 2025

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CellProfiler plugins - An easy image analysis platform integration for containers and Python tools.
Erin Weisbart, Callum Tromans-Coia, Barbara Diaz-Rohrer, David R Stirling, Fernanda Garcia-Fossa

J Microsc· December 2024

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Cell Painting Gallery: an open resource for image-based profiling.
Erin Weisbart, Ankur Kumar, John Arevalo, Anne E Carpenter, Beth A Cimini

Nat Methods· October 2024

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Making the most of bioimaging data through interdisciplinary interactions.
Virginie Uhlmann, Matthew Hartley, Josh Moore, Erin Weisbart, Assaf Zaritsky

J Cell Sci· October 2024

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A postdoctoral training program in bioimage analysis.
Beth A Cimini, Callum Tromans-Coia, David R Stirling, Suganya Sivagurunathan, Rebecca A Senft, Erin Weisbart

Mol Biol Cell· September 2024

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Reproducible image-based profiling with Pycytominer.
Erik Serrano, Srinivas Niranj Chandrasekaran, Dave Bunten, Kenneth I Brewer, Jenna Tomkinson, Erin Weisbart

ArXiv· July 2024

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The multimodality cell segmentation challenge: toward universal solutions.
Jun Ma, Ronald Xie, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, Erin Weisbart

Nat Methods· June 2024

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Anomaly detection for high-content image-based phenotypic cell profiling.
Alon Shpigler, Naor Kolet, Shahar Golan, Erin Weisbart, Assaf Zaritsky

bioRxiv· June 2024

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A Postdoctoral Training Program in Bioimage Analysis.
Beth A Cimini, Callum Tromans-Coia, David Stirling, Suganya Sivagurunathan, Rebecca Senft, Erin Weisbart

bioRxiv· May 2024

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Cell Painting Gallery: an open resource for image-based profiling.
Erin Weisbart, Ankur Kumar, John Arevalo, Anne E Carpenter, Beth A Cimini

ArXiv· February 2024

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High-dimensional phenotyping to define the genetic basis of cellular morphology.
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A Cimini, Ajay Nadig, Erin Weisbart

Nat Commun· January 2024

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OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Erin Weisbart

Histochem Cell Biol· September 2023

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Distributed-Something: scripts to leverage AWS storage and computing for distributed workflows at scale.
Erin Weisbart, Beth A Cimini

Nat Methods· August 2023

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A genome-wide atlas of human cell morphology.
Meraj Ramezani, Julia Bauman, Avtar Singh, Erin Weisbart, John Yong

bioRxiv· August 2023

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CellProfiler plugins -- an easy image analysis platform integration for containers and Python tools.
Erin Weisbart, Callum Tromans-Coia, Barbara Diaz-Rohrer, David R Stirling, Fernanda Garcia-Fossa

ArXiv· August 2023

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Optimizing the Cell Painting assay for image-based profiling.
Beth A Cimini, Srinivas Niranj Chandrasekaran, Maria Kost-Alimova, Lisa Miller, Amy Goodale, Erin Weisbart

Nat Protoc· July 2023

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OME-Zarr: a cloud-optimized bioimaging file format with international community support.
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Erin Weisbart

bioRxiv· May 2023

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Morphology and gene expression profiling provide complementary information for mapping cell state.
Gregory P Way, Ted Natoli, Adeniyi Adeboye, Lev Litichevskiy, Andrew Yang, Erin Weisbart

Cell Syst· November 2022

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