Publications by authors named "Ansuman T Satpathy"

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Skin basal cell carcinomas assemble a pro-tumorigenic spatially organized and self-propagating Trem2+ myeloid niche.
Daniel Haensel, Bence Daniel, Sadhana Gaddam, Cory Pan, Tania Fabo, Jeremy Bjelajac, Anna R Jussila, Fernanda Gonzalez, Nancy Yanzhe Li, Yun Chen

Nat Commun· May 2023

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Erythropoietin receptor on cDC1s dictates immune tolerance.
Xiangyue Zhang, Christopher S McGinnis, Guotao Yu, Sijie Chen, Pingping Zheng, Ansuman T Satpathy

Nature· December 2025

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FOXP3 expression depends on cell-type-specific cis-regulatory elements and transcription factor circuitry.
Jennifer M Umhoefer, Maya M Arce, Sivakanthan Kasinathan, Sean Whalen, Rama Dajani, Ansuman T Satpathy

Immunity· November 2025

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A unified genetic perturbation language for human cellular programming.
Austin Hartman, Oliver Takacsi-Nagy, Courtney Kernick, Nicole E Theberath, Johnathan Lu, Ansuman T Satpathy

bioRxiv· November 2025

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The transcriptional repressor BLIMP1 enforces TCF-1-dependent and -independent restriction of the memory fate of CD8 T cells.
Maegan K Murphy, Matthew McCullen, Joshua L Deffenbaugh, Andy Y Chen, Joy Pai, Ansuman T Satpathy

Immunity· October 2025

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Engineering T cells with a membrane-tethered version of SLP-76 overcomes antigen-low resistance to CAR T cell therapy.
Maria Caterina Rotiroti, Aidan M Tousley, Hoyin Chu, Marco Herrera-Barrera, Antigoni Manousopoulou, Ansuman T Satpathy

Nat Cancer· October 2025

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Scalable transcription factor mapping uncovers the regulatory dynamics of natural and synthetic transcription factors in human T cell states.
Riley D Z Mullins, Jesse Zaretsky, Emily Stoller, Michael Moore, Oliver Takacsi-Nagy, Ansuman T Satpathy

bioRxiv· October 2025

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Non-viral intron knock-ins for targeted gene integration into human T cells and for T-cell selection.
Theodore L Roth, Johnathan Lu, Alison McClellan, Courtney Kernick, Oliver Takacsi-Nagy, Ansuman T Satpathy

Nat Biomed Eng· August 2025

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Massively parallel immunopeptidome by DNA sequencing provides insights into cancer antigen presentation.
Quanming Shi, Elana P Simon, Cansu Cimen Bozkus, Anna Kaminska, Leandra Velazquez, Ansuman T Satpathy

Nat Genet· August 2025

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Clonal tracing with somatic epimutations reveals dynamics of blood ageing.
Michael Scherer, Indranil Singh, Martina Maria Braun, Chelsea Szu-Tu, Pedro Sanchez Sanchez, Ansuman T Satpathy

Nature· July 2025

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Cell type-specific purifying selection of synonymous mitochondrial DNA variation.
Caleb A Lareau, Patrick Maschmeyer, Yajie Yin, Jacob C Gutierrez, Ryan S Dhindsa, Ansuman T Satpathy

Proc Natl Acad Sci U S A· July 2025

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Clonal lineage tracing of innate immune cells in human cancer.
Vincent Liu, Katalin Sandor, Patrick K Yan, Max Miao, Yajie Yin, Ansuman T Satpathy

bioRxiv· July 2025

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Cell cycle-coupled transcriptional network orchestrates human B cell fate bifurcation.
Nicholas A Pease, Jingyu Fan, Swapnil Keshari, Jered Stratton, Peter Gerges, Ansuman T Satpathy

bioRxiv· June 2025

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Translation dysregulation in cancer as a source for targetable antigens.
Chen Weller, Osnat Bartok, Christopher S McGinnis, Heyilimu Palashati, Tian-Gen Chang, Ansuman T Satpathy

Cancer Cell· May 2025

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Induced B cell receptor diversity predicts PD-1 blockade immunotherapy response.
Yonglu Che, Jinwoo Lee, Farah Abou-Taleb, Kerri E Rieger, Ansuman T Satpathy

Proc Natl Acad Sci U S A· May 2025

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Transcript-specific enrichment enables profiling of rare cell states via single-cell RNA sequencing.
Tsion Abay, Robert R Stickels, Meril T Takizawa, Benan N Nalbant, Yu-Hsin Hsieh, Ansuman T Satpathy

Nat Genet· February 2025

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Functional memory T cells are derived from exhausted clones and expanded by checkpoint blockade.
Colin J Raposo, Patrick K Yan, Andy Y Chen, Saba Majidi, Kamir J Hiam-Galvez, Ansuman T Satpathy

bioRxiv· February 2025

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Cis-Regulatory Element and Transcription Factor Circuitry Required for Cell-Type Specific Expression of FOXP3.
Jennifer M Umhoefer, Maya M Arce, Sean Whalen, Rama Dajani, Laine Goudy, Ansuman T Satpathy

bioRxiv· January 2025

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Central control of dynamic gene circuits governs T cell rest and activation.
Maya M Arce, Jennifer M Umhoefer, Nadia Arang, Sivakanthan Kasinathan, Jacob W Freimer, Ansuman T Satpathy

Nature· January 2025

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Mechanism-guided engineering of a minimal biological particle for genome editing.
Wayne Ngo, Julia Peukes, Alisha Baldwin, Zhiwei Wayne Xue, Sidney Hwang, Ansuman T Satpathy

Proc Natl Acad Sci U S A· January 2025

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Temporal Genomic Analysis of Homogeneous Tumor Models Reveals Key Regulators of Immune Evasion in Melanoma.
Sapir Cohen Shvefel, Joy A Pai, Yingying Cao, Lipika R Pal, Osnat Bartok, Ansuman T Satpathy

Cancer Discov· January 2025

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Multi-modal analysis reveals tumor and immune features distinguishing EBV-positive and EBV-negative post-transplant lymphoproliferative disorders.
Jiaying Toh, Andrea J Reitsma, Tetsuya Tajima, Sheren F Younes, Chimere Ezeiruaku, Ansuman T Satpathy

Cell Rep Med· December 2024

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Induced B-Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response.
Yonglu Che, Jinwoo Lee, Farah Abou-Taleb, Kerri E Rieger, Ansuman T Satpathy

bioRxiv· December 2024

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Retinoic acid and TGF-β orchestrate organ-specific programs of tissue residency.
Andreas Obers, Tobias Poch, Grace Rodrigues, Susan N Christo, Luke C Gandolfo, Ansuman T Satpathy

Immunity· November 2024

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Mapping enhancer-gene regulatory interactions from single-cell data.
Maya U Sheth, Wei-Lin Qiu, X Rosa Ma, Andreas R Gschwind, Evelyn Jagoda, Ansuman T Satpathy

bioRxiv· November 2024

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Temporal genomic analysis of homogeneous tumor models reveals key regulators of immune evasion in melanoma.
Sapir Cohen Shvefel, Joy A Pai, Yingying Cao, Lipika R Pal, Osnat Bartok, Ansuman T Satpathy

Cancer Discov· November 2024

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