Publications by authors named "Ari Frank"

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Sequencing-grade de novo analysis of MS/MS triplets (CID/HCD/ETD) from overlapping peptides.
Adrian Guthals, Karl R Clauser, Ari M Frank, Nuno Bandeira

J Proteome Res· June 2013

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Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra.
Ari M Frank, Matthew E Monroe, Anuj R Shah, Jeremy J Carver, Nuno Bandeira

Nat Methods· May 2011

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A ranking-based scoring function for peptide-spectrum matches.
Ari M Frank

J Proteome Res· May 2009

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Predicting intensity ranks of peptide fragment ions.
Ari M Frank

J Proteome Res· May 2009

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Interpreting top-down mass spectra using spectral alignment.
Ari M Frank, James J Pesavento, Craig A Mizzen, Neil L Kelleher, Pavel A Pevzner

Anal Chem· April 2008

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Clustering millions of tandem mass spectra.
Ari M Frank, Nuno Bandeira, Zhouxin Shen, Stephen Tanner, Steven P Briggs

J Proteome Res· January 2008

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Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
Patrice Waridel, Ari Frank, Henrik Thomas, Vineeth Surendranath, Shamil Sunyaev

Proteomics· July 2007

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Protein identification by spectral networks analysis.
Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A Pevzner

Proc Natl Acad Sci U S A· April 2007

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De novo peptide sequencing and identification with precision mass spectrometry.
Ari M Frank, Mikhail M Savitski, Michael L Nielsen, Roman A Zubarev, Pavel A Pevzner

J Proteome Res· January 2007

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Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches.
Natalie Wielsch, Henrik Thomas, Vineeth Surendranath, Patrice Waridel, Ari Frank

J Proteome Res· September 2006

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Peptide sequence tags for fast database search in mass-spectrometry.
Ari Frank, Stephen Tanner, Vineet Bafna, Pavel Pevzner

J Proteome Res· October 2005

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InsPecT: identification of posttranslationally modified peptides from tandem mass spectra.
Stephen Tanner, Hongjun Shu, Ari Frank, Ling-Chi Wang, Ebrahim Zandi

Anal Chem· July 2005

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PepNovo: de novo peptide sequencing via probabilistic network modeling.
Ari Frank, Pavel Pevzner

Anal Chem· February 2005

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