Publications by authors named "Arjun Ray"

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QKI ensures splicing fidelity during cardiogenesis by engaging the U6 tri-snRNP to activate splicing at weak 5' splice sites.
Maureen V Akinyi, Wenjie Yao, Jakub Zeman, Clara Hipp, Deniz Bartsch, Arjun Ray

bioRxiv· September 2025

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Ser/Thr phosphorylation of type II RelK toxin by PknK destabilizes TA interaction and interferes with toxin neutralization.
Shafinaz Rahman Sarah, Abhishek Garg, Sadiyah Afroz, Shaleen Korch, Arjun Ray

mBio· July 2025

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Molecular Modeling of Non-Canonical Intramolecular RNA Triple Helix Structures Predicted from TRIPinRNA and Their In Vitro Biophysical Structure Validation.
Isha Rakheja, Gayatri Panda, Souvik Maiti, Arjun Ray

J Phys Chem B· May 2025

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An Algorithm-Based Investigation to Reveal the Differential Dynamics of Water inside Protein Cavities as a Function of Distance from Their Wall.
Abel Xavier Francis, Mansi Chilkoti, Atul, Mrinal, Sukriti Sacher, Arjun Ray

J Chem Inf Model· May 2025

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Deciphering Cas9 specificity: Role of domain dynamics and RNA:DNA hybrid interactions revealed through machine learning and accelerated molecular simulations.
Gayatri Panda, Arjun Ray

Int J Biol Macromol· December 2024

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In Silico Strategies for Characterizing Inner Cavities of Lipid-Binding Proteins.
Sukriti Sacher, Arjun Ray

Methods Mol Biol· December 2024

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Identification of pseudobaptigenin as a novel polyphenol-based multi-target antagonist of different hormone receptors for breast cancer therapeutics.
Sarbajit Ray, Suchetana Gupta, Gayatri Panda, Prarthana Chatterjee, Anoushka Das, Arjun Ray

J Biomol Struct Dyn· July 2024

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Deciphering structural aspects of reverse cholesterol transport: mapping the knowns and unknowns.
Sukriti Sacher, Abhishek Mukherjee, Arjun Ray

Biol Rev Camb Philos Soc· August 2023

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Small molecule quercetin binds triplex and modulates its cellular function.
Isha Rakheja, Asgar Hussain Ansari, Arjun Ray, Dheeraj Chandra Joshi, Souvik Maiti

Mol Ther Nucleic Acids· December 2022

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Decrypting the mechanistic basis of CRISPR/Cas9 protein.
Gayatri Panda, Arjun Ray

Prog Biophys Mol Biol· August 2022

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Comparative structural and dynamics study of free and gRNA-bound FnCas9 and SpCas9 proteins.
Gayatri Panda, Arjun Ray

Comput Struct Biotechnol J· August 2022

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Comprehensive Assessment of Indian Variations in the Druggable Kinome Landscape Highlights Distinct Insights at the Sequence, Structure and Pharmacogenomic Stratum.
Gayatri Panda, Neha Mishra, Disha Sharma, Rintu Kutum, Rahul C Bhoyar, Arjun Ray

Front Pharmacol· July 2022

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Stress Responses Elicited by Misfolded Proteins Targeted to Mitochondria.
Kannan Boosi Narayana Rao, Pratima Pandey, Rajasri Sarkar, Asmita Ghosh, Shemin Mansuri, Arjun Ray, Swasti Raychaudhuri

J Mol Biol· June 2022

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Conserved and divergent chaperoning effects of Hsp60/10 chaperonins on protein folding landscapes.
Anwar Sadat, Satyam Tiwari, S Sunidhi, Aseem Chaphalkar, Manisha Kochar, Kannan Boosi Narayana Rao, Arjun Ray

Proc Natl Acad Sci U S A· May 2022

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A High Throughput Lipidomics Method Using Multiple Reaction Monitoring.
Akash Kumar Bhaskar, Salwa Naushin, Arjun Ray, Praveen Singh, Anurag Raj

Biomolecules· May 2022

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Anti-SARS-CoV-2 potential of Cissampelos pareira L. identified by connectivity map-based analysis and in vitro studies.
Madiha Haider, Vivek Anand, M Ghalib Enayathullah, Yash Parekh, Sushma Ram, Arjun Ray

BMC Complement Med Ther· April 2022

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Elucidating the Structural Features of ABCA1 in its Heterogeneous Membrane Environment.
S Sunidhi, Sukriti Sacher, Atul, Parth Garg, Arjun Ray

Front Mol Biosci· January 2022

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Neuromorphic Instantiation of Spiking Half-Centered Oscillator Models for Central Pattern Generation.
Aditya Athota, Blair Caccam, Ryan Kochis, Arjun Ray, Gert Cauwenberghs

Annu Int Conf IEEE Eng Med Biol Soc· November 2021

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Transcriptome analysis and connectivity mapping of Cissampelos pareira L. provides molecular links of ESR1 modulation to viral inhibition.
Madiha Haider, Dhwani Dholakia, Aleksha Panwar, Parth Garg, Atish Gheware, Arjun Ray

Sci Rep· October 2021

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LncRNA VEAL2 regulates PRKCB2 to modulate endothelial permeability in diabetic retinopathy.
Paras Sehgal, Samatha Mathew, Ambily Sivadas, Arjun Ray, Jyoti Tanwar

EMBO J· August 2021

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Contrasting conformational dynamics of β-sheet A and helix F with implications in neuroserpin inhibition and aggregation.
Shoyab Ansari, Arjun Ray, Mohammad Farhan Ali, Shadabi Bano, Mohamad Aman Jairajpuri

Int J Biol Macromol· April 2021

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Identification of Potential Phosphorylation in the Cytoplasmic Domain of Epithelial Cell Adhesion Molecule.
Arijit Mal, Pranay Dey, Robert Michael Hayes, Justin V McCarthy, Arjun Ray

ACS Omega· December 2020

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GROEL/ES Buffers Entropic Traps in Folding Pathway during Evolution of a Model Substrate.
Anwar Sadat, Satyam Tiwari, Kanika Verma, Arjun Ray, Mudassar Ali

J Mol Biol· September 2020

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A rapid and sensitive method to detect SARS-CoV-2 virus using targeted-mass spectrometry.
Praveen Singh, Rahul Chakraborty, Robin Marwal, V S Radhakrishan, Akash Kumar Bhaskar, Arjun Ray

J Proteins Proteom· August 2020

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Cas9 interrogates genomic DNA with very high specificity and can be used for mammalian genome editing.
Sundaram Acharya, Arpit Mishra, Deepanjan Paul, Asgar Hussain Ansari, Mohd Azhar, Arjun Ray

Proc Natl Acad Sci U S A· October 2019

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