Publications by authors named "Arpad Danos"

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CIViC MCP: Integrating Large Language Models with the Clinical Interpretations of Variants in Cancer.
Lars Schimmelpfennig, Quentin Cody, Joshua McMichael, Adam C Coffman, Jason Saliba, Arpad Danos

bioRxiv· October 2025

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Evaluating Language Models for Biomedical Fact-Checking: A Benchmark Dataset for Cancer Variant Interpretation Verification.
Caralyn Reisle, Cameron J Grisdale, Kilannin Krysiak, Arpad M Danos, Mariam Khanfar

bioRxiv· September 2025

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A New Era of Data-Driven Cancer Research and Care: Opportunities and Challenges.
Felicia Gomez, Arpad M Danos, Guilherme Del Fiol, Anant Madabhushi, Pallavi Tiwari

Cancer Discov· October 2024

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CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.
Kilannin Krysiak, Arpad M Danos, Jason Saliba, Joshua F McMichael, Adam C Coffman

Nucleic Acids Res· January 2023

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Large scale genotype- and phenotype-driven machine learning in Von Hippel-Lindau disease.
Andreea Chiorean, Kirsten M Farncombe, Sean Delong, Veronica Andric, Safa Ansar, Arpad M Danos

Hum Mutat· September 2022

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Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC).
Peter Horak, Malachi Griffith, Arpad M Danos, Beth A Pitel, Subha Madhavan

Genet Med· September 2022

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Standardized evidence-based approach for assessment of oncogenic and clinical significance of NTRK fusions.
Jason Saliba, Alanna J Church, Shruti Rao, Arpad Danos, Larissa V Furtado

Cancer Genet· June 2022

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Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC).
Peter Horak, Malachi Griffith, Arpad M Danos, Beth A Pitel, Subha Madhavan

Genet Med· May 2022

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A community approach to the cancer-variant-interpretation bottleneck.
Kilannin Krysiak, Arpad M Danos, Susanna Kiwala, Joshua F McMichael, Adam C Coffman

Nat Cancer· May 2022

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CIViCpy: A Python Software Development and Analysis Toolkit for the CIViC Knowledgebase.
Alex H Wagner, Susanna Kiwala, Adam C Coffman, Joshua F McMichael, Kelsy C Cotto, Arpad M Danos

JCO Clin Cancer Inform· March 2020

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Standard operating procedure for curation and clinical interpretation of variants in cancer.
Arpad M Danos, Kilannin Krysiak, Erica K Barnell, Adam C Coffman, Joshua F McMichael

Genome Med· November 2019

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Open-Sourced CIViC Annotation Pipeline to Identify and Annotate Clinically Relevant Variants Using Single-Molecule Molecular Inversion Probes.
Erica K Barnell, Adam Waalkes, Matt C Mosior, Kelsi Penewit, Kelsy C Cotto, Arpad M Danos

JCO Clin Cancer Inform· October 2019

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Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples.
Erica K Barnell, Peter Ronning, Katie M Campbell, Kilannin Krysiak, Benjamin J Ainscough, Arpad M Danos

Genet Med· April 2019

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Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards.
Arpad M Danos, Deborah I Ritter, Alex H Wagner, Kilannin Krysiak, Dmitriy Sonkin

Hum Mutat· November 2018

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CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.
Malachi Griffith, Nicholas C Spies, Kilannin Krysiak, Joshua F McMichael, Adam C Coffman, Arpad M Danos

Nat Genet· January 2017

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Functional inactivation of Rb sensitizes cancer cells to TSC2 inactivation induced cell death.
Arpad M Danos, Yang Liao, Xuan Li, Wei Du

Cancer Lett· January 2013

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Differential regulation of glycogenolysis by mutant protein phosphatase-1 glycogen-targeting subunits.
Arpad M Danos, Senad Osmanovic, Matthew J Brady

J Biol Chem· July 2009

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Altering PPARgamma ligand selectivity impairs adipogenesis by thiazolidinediones but not hormonal inducers.
Shanika P Samarasinghe, Maria M Sutanto, Arpad M Danos, Daniel N Johnson, Matthew J Brady

Obesity (Silver Spring)· May 2009

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The role of protein translocation in the regulation of glycogen metabolism.
Michael J Jurczak, Arpad M Danos, Victoria R Rehrmann, Matthew J Brady

J Cell Biochem· May 2008

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Transgenic overexpression of protein targeting to glycogen markedly increases adipocytic glycogen storage in mice.
Michael J Jurczak, Arpad M Danos, Victoria R Rehrmann, Margaret B Allison, Cynthia C Greenberg

Am J Physiol Endocrinol Metab· March 2007

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Glycogen branches out: new perspectives on the role of glycogen metabolism in the integration of metabolic pathways.
Cynthia C Greenberg, Michael J Jurczak, Arpad M Danos, Matthew J Brady

Am J Physiol Endocrinol Metab· July 2006

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Central role for protein targeting to glycogen in the maintenance of cellular glycogen stores in 3T3-L1 adipocytes.
Cynthia C Greenberg, Arpad M Danos, Matthew J Brady

Mol Cell Biol· January 2006

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Gene expression profiles in HEK-293 cells with low or high store-operated calcium entry: can regulatory as well as regulated genes be identified?
Tatiana K Zagranichnaya, Xiaoyan Wu, Arpad M Danos, Mitchel L Villereal

Physiol Genomics· March 2005

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