Publications by authors named "Arpit Tandon"

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Artificial intelligence (AI)-driven morphological assessment of zebrafish larvae for developmental toxicity chemical screening.
Arpit Tandon, Brian E Howard, Adrian J Green, Rebecca Elmore, Ruchir Shah

Aquat Toxicol· August 2025

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Unraveling Human Hepatocellular Responses to PFAS and Aqueous Film-Forming Foams (AFFFs) for Molecular Hazard Prioritization and In Vivo Translation.
Kevin A Mauge-Lewis, Sreenivasa C Ramaiahgari, Scott S Auerbach, Georgia K Roberts, Suramya Waidyanatha, Arpit Tandon

Environ Sci Technol· February 2025

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Deep Learning Image Analysis of High-Throughput Toxicology Assay Images.
Arpit Tandon, Brian Howard, Sreenivasa Ramaiahgari, Adyasha Maharana, Stephen Ferguson

SLAS Discov· January 2022

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Risk and Protective Factors in the COVID-19 Pandemic: A Rapid Evidence Map.
Rebecca Elmore, Lena Schmidt, Juleen Lam, Brian E Howard, Arpit Tandon

Front Public Health· January 2021

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An integrated chemical environment with tools for chemical safety testing.
Shannon Bell, Jaleh Abedini, Patricia Ceger, Xiaoqing Chang, Bethany Cook, Arpit Tandon

Toxicol In Vitro· September 2020

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SWIFT-Active Screener: Accelerated document screening through active learning and integrated recall estimation.
Brian E Howard, Jason Phillips, Arpit Tandon, Adyasha Maharana, Rebecca Elmore

Environ Int· May 2020

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BMDExpress 2: enhanced transcriptomic dose-response analysis workflow.
Jason R Phillips, Daniel L Svoboda, Arpit Tandon, Shyam Patel, Alex Sedykh

Bioinformatics· May 2019

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Structure modeling of RNA using sparse NMR constraints.
Benfeard Williams, Bo Zhao, Arpit Tandon, Feng Ding, Kevin M Weeks

Nucleic Acids Res· December 2017

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A role for BRG1 in the regulation of genes required for development of the lymphatic system.
Ajeet Pratap Singh, Julie Foley, Arpit Tandon, Dhiral Phadke, H Karimi Kinyamu

Oncotarget· August 2017

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RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
Zhichao Miao, Ryszard W Adamiak, Maciej Antczak, Robert T Batey, Alexander J Becka, Arpit Tandon

RNA· May 2017

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An Integrated Chemical Environment to Support 21st-Century Toxicology.
Shannon M Bell, Jason Phillips, Alexander Sedykh, Arpit Tandon, Catherine Sprankle

Environ Health Perspect· May 2017

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A Structural Model for Vinculin Insertion into PIP-Containing Membranes and the Effect of Insertion on Vinculin Activation and Localization.
Peter M Thompson, Srinivas Ramachandran, Lindsay B Case, Caitlin E Tolbert, Arpit Tandon

Structure· February 2017

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Brg1 Enables Rapid Growth of the Early Embryo by Suppressing Genes That Regulate Apoptosis and Cell Growth Arrest.
Ajeet P Singh, Julie F Foley, Mark Rubino, Michael C Boyle, Arpit Tandon

Mol Cell Biol· August 2016

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SWIFT-Review: a text-mining workbench for systematic review.
Brian E Howard, Jason Phillips, Kyle Miller, Arpit Tandon, Deepak Mav

Syst Rev· May 2016

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RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.
Zhichao Miao, Ryszard W Adamiak, Marc-Frédérick Blanchet, Michal Boniecki, Janusz M Bujnicki, Arpit Tandon

RNA· June 2015

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RNA tertiary structure analysis by 2'-hydroxyl molecular interference.
Philip J Homan, Arpit Tandon, Greggory M Rice, Feng Ding, Nikolay V Dokholyan

Biochemistry· November 2014

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Analysis of interactions between the epigenome and structural mutability of the genome using Genboree Workbench tools.
Cristian Coarfa, Christina Pichot, Andrew Jackson, Arpit Tandon, Viren Amin

BMC Bioinformatics· October 2014

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Deep sequencing identification of novel glucocorticoid-responsive miRNAs in apoptotic primary lymphocytes.
Lindsay K Smith, Arpit Tandon, Ruchir R Shah, Deepak Mav, Alyson B Scoltock

PLoS One· June 2014

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Computational approaches to understanding protein aggregation in neurodegeneration.
Rachel L Redler, David Shirvanyants, Onur Dagliyan, Feng Ding, Doo Nam Kim, Arpit Tandon

J Mol Cell Biol· April 2014

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The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences.
Kevin Riehle, Cristian Coarfa, Andrew Jackson, Jun Ma, Arpit Tandon

BMC Bioinformatics· May 2013

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miRNA data analysis: next-gen sequencing.
Preethi H Gunaratne, Cristian Coarfa, Benjamin Soibam, Arpit Tandon

Methods Mol Biol· April 2012

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Structural insights into the binding of MMP9 inhibitors.
Arpit Tandon, Siddharth Sinha

Bioinformation· January 2011

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