Publications by authors named "Art Poon"

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Spatiotemporal structure of SARS-CoV-2 mutational frequencies in wastewater samples from Ontario.
Paula Magbor, William Z Wang, Gopi Gugan, Abayomi S Olabode, Devan G Becker, Art F Y Poon

PLoS One· January 2026

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Estimating HIV-1 Viremic Time from Reservoir Sequence Diversity with Uncertainty Quantification.
Edward N Kankaka, Stephen Tomusange, Taddeo Kityamuweesi, Gabriel Quiros, Nicholas DiRico, Art F Y Poon

J Infect Dis· January 2026

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Ancestral reconstruction supports that loss of Nef-mediated T cell modulation coincided with the emergence of pathogenic lentiviruses.
Angelina M Baldino, Mitchell J Mumby, Cassandra R Edgar, Abayomi S Olabode, Art F Y Poon

J Virol· December 2025

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Association between HIV-1 Nef-mediated MHC-I downregulation and the maintenance of the replication-competent latent viral reservoir in individuals with virally suppressed HIV-1 in Uganda: an exploratory cohort study.
Mitchell J Mumby, Jessica L Prodger, Jada Hackman, Sharada Saraf, Xianming Zhu, Art F Y Poon

Lancet Microbe· May 2025

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Variability of Clinical Metrics in Small Population Communities Drive Perceived Wastewater and Environmental Surveillance Data Quality: Ontario, Canada-Wide Study.
Nada Hegazy, K Ken Peng, Patrick M D'Aoust, Lakshmi Pisharody, Elisabeth Mercier, Art F Y Poon

ACS ES T Water· April 2025

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Impact of Variable Sampling on Estimates of HIV-1 Reservoir Formation Dates.
Edward N Kankaka, Art F Y Poon, Thomas C Quinn, Larry W Chang, Jessica L Prodger

J Infect Dis· October 2024

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The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Erin E Gill, Baofeng Jia, Carmen Lia Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Art F Y Poon

Microb Genom· October 2024

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Prospects for a sequence-based taxonomy of influenza A virus subtypes.
Art F Y Poon

Virus Evol· August 2024

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SARS-CoV-2 viral titer measurements in Ontario, Canada wastewaters throughout the COVID-19 pandemic.
Patrick M D'Aoust, Nada Hegazy, Nathan T Ramsay, Minqing Ivy Yang, Hadi A Dhiyebi, Art Poon

Sci Data· June 2024

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The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Erin E Gill, Baofeng Jia, Carmen Lia Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Art F Y Poon

ArXiv· May 2024

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Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data.
Steven G Sutcliffe, Susanne A Kraemer, Isaac Ellmen, Jennifer J Knapp, Alyssa K Overton, Art F Y Poon

Microb Genom· May 2024

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Temporary increase in circulating replication-competent latent HIV-infected resting CD4+ T cells after switch to an integrase inhibitor based antiretroviral regimen.
Roux-Cil Ferreira, Steven J Reynolds, Adam A Capoferri, Owen R Baker, Erin E Brown, Art F Y Poon

EBioMedicine· April 2024

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Real-time evaluation of signal accuracy in wastewater surveillance of pathogens with high rates of mutation.
Ocean Thakali, Élisabeth Mercier, Walaa Eid, Martin Wellman, Julia Brasset-Gorny, Art F Y Poon

Sci Rep· February 2024

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Phylogenetic Reconstruction and Functional Characterization of the Ancestral Nef Protein of Primate Lentiviruses.
Abayomi S Olabode, Mitchell J Mumby, Tristan A Wild, Laura Muñoz-Baena, Jimmy D Dikeakos, Art F Y Poon

Mol Biol Evol· August 2023

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Dating reservoir formation in virologically suppressed people living with HIV-1 in Rakai, Uganda.
Edward Nelson Kankaka, Andrew D Redd, Amjad Khan, Steven J Reynolds, Sharada Saraf, Art Poon

Virus Evol· July 2023

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SUP: a probabilistic framework to propagate genome sequence uncertainty, with applications.
Devan Becker, David Champredon, Connor Chato, Gopi Gugan, Art Poon

NAR Genom Bioinform· June 2023

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Temporary increase in circulating replication-competent latent HIV-infected resting CD4+ T cells after switch to an integrase inhibitor based antiretroviral regimen.
Roux-Cil Ferreira, Steven J Reynolds, Adam A Capoferri, Owen Baker, Erin E Brown, Art F Y Poon

medRxiv· May 2023

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From components to communities: bringing network science to clustering for molecular epidemiology.
Molly Liu, Connor Chato, Art F Y Poon

Virus Evol· April 2023

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Clustering Highly Divergent Homologous Proteins: An Alignment-Free Method.
Laura Muñoz-Baena, Art F Y Poon

Curr Protoc· February 2023

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HexSE: Simulating evolution in overlapping reading frames.
Laura Muñoz-Baena, Kaitlyn E Wade, Art F Y Poon

Virus Evol· February 2023

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bayroot: Bayesian sampling of HIV-1 integration dates by root-to-tip regression.
Roux-Cil Ferreira, Emmanuel Wong, Art F Y Poon

Virus Evol· December 2022

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Molecular source attribution.
Elisa Chao, Connor Chato, Reid Vender, Abayomi S Olabode, Roux-Cil Ferreira, Art F Y Poon

PLoS Comput Biol· November 2022

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Optimized phylogenetic clustering of HIV-1 sequence data for public health applications.
Connor Chato, Yi Feng, Yuhua Ruan, Hui Xing, Joshua Herbeck, Art F Y Poon

PLoS Comput Biol· November 2022

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Traversing missing links in the spread of HIV.
Erin Brintnell, Art Poon

Elife· September 2022

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Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada.
Angela McLaughlin, Vincent Montoya, Rachel L Miller, Gideon J Mordecai, , Art F Y Poon

Elife· August 2022

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