Publications by authors named "Arthur Gruber"

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RdDM-Associated Chromatin Remodelers in Soybean: Evolution and Stress-Induced Expression of CLASSY Genes.
Paula Machado de Araújo, Arthur Gruber, Liliane Santana Oliveira, Sara Sangi, Geovanna Vitória Olimpio

Plants (Basel)· August 2025

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Integrating Sequence- and Structure-Based Similarity Metrics for the Demarcation of Multiple Viral Taxonomic Levels.
Igor C Dos Santos, Rebecca di Stephano de Souza, Igor Tolstoy, Liliane S Oliveira, Arthur Gruber

Viruses· April 2025

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Rational Design of Profile HMMs for Sensitive and Specific Sequence Detection with Case Studies Applied to Viruses, Bacteriophages, and Casposons.
Liliane S Oliveira, Alejandro Reyes, Bas E Dutilh, Arthur Gruber

Viruses· February 2023

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Characterization of a Novel Mitovirus of the Sand Fly Using Genomic and Virus-Host Interaction Signatures.
Paula Fonseca, Flavia Ferreira, Felipe da Silva, Liliane Santana Oliveira, João Trindade Marques, Arthur Gruber

Viruses· December 2020

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A single unidirectional piRNA cluster similar to the locus is the major source of EVE-derived transcription and small RNAs in mosquitoes.
Eric Roberto Guimarães Rocha Aguiar, João Paulo Pereira de Almeida, Lucio Rezende Queiroz, Liliane Santana Oliveira, Roenick Proveti Olmo, Arthur Gruber

RNA· May 2020

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Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.
Bashar Ibrahim, Ksenia Arkhipova, Arno C Andeweg, Susana Posada-Céspedes, François Enault, Arthur Gruber

Viruses· May 2018

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Draft Genome Sequence of Curtobacterium sp. Strain ER1/6, an Endophytic Strain Isolated from Citrus sinensis with Potential To Be Used as a Biocontrol Agent.
Leandro Maza Garrido, João Marcelo Pereira Alves, Liliane Santana Oliveira, Arthur Gruber, Gabriel Padilla

Genome Announc· November 2016

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GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data.
João M P Alves, André L de Oliveira, Tatiana O M Sandberg, Jaime L Moreno-Gallego, Marcelo A F de Toledo, Arthur Gruber

Front Microbiol· March 2016

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The Pangenome of the Anticarsia gemmatalis Multiple Nucleopolyhedrovirus (AgMNPV).
Anderson Fernandes de Brito, Carla Torres Braconi, Manfred Weidmann, Meik Dilcher, João Marcelo Pereira Alves, Arthur Gruber

Genome Biol Evol· November 2015

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Genomic analysis of the causative agents of coccidiosis in domestic chickens.
Adam J Reid, Damer P Blake, Hifzur R Ansari, Karen Billington, Hilary P Browne, Arthur Gruber

Genome Res· October 2014

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A selective review of advances in coccidiosis research.
H David Chapman, John R Barta, Damer Blake, Arthur Gruber, Mark Jenkins

Adv Parasitol· February 2014

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The Eimeria transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria.
Luiz Thibério Rangel, Jeniffer Novaes, Alan M Durham, Alda Maria B N Madeira, Arthur Gruber

Database (Oxford)· June 2013

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A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages.
Jeniffer Novaes, Luiz Thibério L D Rangel, Milene Ferro, Ricardo Y Abe, Alessandra P S Manha, Arthur Gruber

Int J Parasitol· January 2012

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Development of molecular assays for the identification of the 11 Eimeria species of the domestic rabbit (Oryctolagus cuniculus).
Ursula C Oliveira, Jane S Fraga, Dominique Licois, Michal Pakandl, Arthur Gruber

Vet Parasitol· March 2011

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Sequence-specific reconstruction from fragmentary databases using seed sequences: implementation and validation on SAGE, proteome and generic sequencing data.
Tiago J P Sobreira, Arthur Gruber

Bioinformatics· August 2008

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Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization.
King-Hwa Ling, Marie-Adele Rajandream, Pierre Rivailler, Alasdair Ivens, Soon-Joo Yap, Arthur Gruber

Genome Res· March 2007

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TRAP: automated classification, quantification and annotation of tandemly repeated sequences.
Tiago José P Sobreira, Alan M Durham, Arthur Gruber

Bioinformatics· February 2006

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T cell epitope characterization in tandemly repetitive Trypanosoma cruzi B13 protein.
Lúcia C J Abel, Leo K Iwai, Wladia Viviani, Angelina M Bilate, Kellen C Faé, Arthur Gruber

Microbes Infect· December 2005

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EGene: a configurable pipeline generation system for automated sequence analysis.
Alan M Durham, André Y Kashiwabara, Fernando T G Matsunaga, Paulo H Ahagon, Flávia Rainone, Arthur Gruber

Bioinformatics· June 2005

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Identification and complete sequencing of novel human transcripts through the use of mouse orthologs and testis cDNA sequences.
Elisa N Ferreira, Lilian C Pires, Raphael B Parmigiani, Fabiana Bettoni, Renato D Puga, Arthur Gruber

Genet Mol Res· December 2004

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Characterization of SCAR markers of Eimeria spp. of domestic fowl and construction of a public relational database (The Eimeria SCARdb).
Sandra Fernandez, Angela M Katsuyama, André Y Kashiwabara, Alda Maria B N Madeira, Alan M Durham, Arthur Gruber

FEMS Microbiol Lett· September 2004

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A transcript finishing initiative for closing gaps in the human transcriptome.
Mari Cleide Sogayar, Anamaria A Camargo, Fabiana Bettoni, Dirce Maria Carraro, Lilian C Pires, Arthur Gruber

Genome Res· July 2004

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The Eimeria genome projects: a sequence of events.
Martin W Shirley, Al Ivens, Arthur Gruber, Alda M B N Madeira, Kiew-Lian Wan

Trends Parasitol· May 2004

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The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags.
Helena Brentani, Otávia L Caballero, Anamaria A Camargo, Aline M da Silva, Wilson Araújo da Silva, Arthur Gruber

Proc Natl Acad Sci U S A· November 2003

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