Publications by authors named "Arzu Umar"

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Phosphoserine aminotransferase 1 is associated to poor outcome on tamoxifen therapy in recurrent breast cancer.
Tommaso De Marchi, Mieke A Timmermans, Anieta M Sieuwerts, Marcel Smid, Maxime P Look, Arzu Umar

Sci Rep· May 2017

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Proteomic characterization of microdissected breast tissue environment provides a protein-level overview of malignant transformation.
René B H Braakman, Christoph Stingl, Madeleine M A Tilanus-Linthorst, Carolien H M van Deurzen, Mieke A M Timmermans, Arzu Umar

Proteomics· March 2017

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Prognostic significance of nuclear expression of UMP-CMP kinase in triple negative breast cancer patients.
Ning Qing Liu, Tommaso De Marchi, Annemieke Timmermans, Anita M A C Trapman-Jansen, Renée Foekens, Arzu Umar

Sci Rep· August 2016

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Endocrine therapy resistance in estrogen receptor (ER)-positive breast cancer.
Tommaso De Marchi, John A Foekens, Arzu Umar, John W M Martens

Drug Discov Today· July 2016

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The advantage of laser-capture microdissection over whole tissue analysis in proteomic profiling studies.
Tommaso De Marchi, Rene B H Braakman, Christoph Stingl, Martijn M van Duijn, Marcel Smid, Arzu Umar

Proteomics· May 2016

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Targeted MS Assay Predicting Tamoxifen Resistance in Estrogen-Receptor-Positive Breast Cancer Tissues and Sera.
Tommaso De Marchi, Erik Kuhn, Lennard J Dekker, Christoph Stingl, Rene B H Braakman, Arzu Umar

J Proteome Res· April 2016

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Shotgun proteomics on tissue specimens extracted with Acid guanidinium-thiocyanate-phenol-chloroform.
René B H Braakman, Anieta M Sieuwerts, Arzu Umar

Methods Mol Biol· February 2016

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Antibody-based capture of target peptides in multiple reaction monitoring experiments.
Tommaso De Marchi, Eric Kuhn, Steven A Carr, Arzu Umar

Methods Mol Biol· February 2016

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4-protein signature predicting tamoxifen treatment outcome in recurrent breast cancer.
Tommaso De Marchi, Ning Qing Liu, Cristoph Stingl, Mieke A Timmermans, Marcel Smid, Arzu Umar

Mol Oncol· January 2016

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Annexin-A1 and caldesmon are associated with resistance to tamoxifen in estrogen receptor positive recurrent breast cancer.
Tommaso De Marchi, Anne M Timmermans, Marcel Smid, Maxime P Look, Christoph Stingl, Arzu Umar

Oncotarget· January 2016

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Global proteomic characterization of microdissected estrogen receptor positive breast tumors.
Tommaso De Marchi, Ning Qing Liu, Christoph Sting, Marcel Smid, Mila Tjoa, Arzu Umar

Data Brief· December 2015

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Integrative analysis of genomics and proteomics data on clinical breast cancer tissue specimens extracted with acid guanidinium thiocyanate-phenol-chloroform.
René B H Braakman, Karel Bezstarosti, Anieta M Sieuwerts, Vanja de Weerd, Anne M van Galen, Arzu Umar

J Proteome Res· March 2015

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Int6 reduction activates stromal fibroblasts to enhance transforming activity in breast epithelial cells.
Jinfeng Suo, Daniel Medina, Sabrina Herrera, Ze-Yi Zheng, Lei Jin, Arzu Umar

Cell Biosci· March 2015

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Use of universal stable isotope labeling by amino acids in cell culture (SILAC)-based selected reaction monitoring (SRM) approach for verification of breast cancer-related protein markers.
Ning Qing Liu, Lennard J M Dekker, Martijn M Van Duijn, Arzu Umar

Methods Mol Biol· December 2014

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Response.
Ning Qing Liu, Marcel Smid, John W M Martens, John A Foekens, Arzu Umar

J Natl Cancer Inst· September 2014

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Ferritin heavy chain in triple negative breast cancer: a favorable prognostic marker that relates to a cluster of differentiation 8 positive (CD8+) effector T-cell response.
Ning Qing Liu, Tommaso De Marchi, Annemieke M Timmermans, Robin Beekhof, Anita M A C Trapman-Jansen, Arzu Umar

Mol Cell Proteomics· July 2014

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Comparative proteome analysis revealing an 11-protein signature for aggressive triple-negative breast cancer.
Ning Qing Liu, Christoph Stingl, Maxime P Look, Marcel Smid, René B H Braakman, Arzu Umar

J Natl Cancer Inst· February 2014

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Quantitative proteomic analysis of microdissected breast cancer tissues: comparison of label-free and SILAC-based quantification with shotgun, directed, and targeted MS approaches.
Ning Qing Liu, Lennard J M Dekker, Christoph Stingl, Coşkun Güzel, Tommaso De Marchi, Arzu Umar

J Proteome Res· October 2013

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Optimized nLC-MS workflow for laser capture microdissected breast cancer tissue.
René B H Braakman, Madeleine M A Tilanus-Linthorst, Ning Qing Liu, Christoph Stingl, Lennard J M Dekker, Arzu Umar

J Proteomics· June 2012

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Proteomics pipeline for biomarker discovery of laser capture microdissected breast cancer tissue.
Ning Qing Liu, René B H Braakman, Christoph Stingl, Theo M Luider, John W M Martens, Arzu Umar

J Mammary Gland Biol Neoplasia· June 2012

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Laser capture microdissection applications in breast cancer proteomics.
René B H Braakman, Theo M Luider, John W M Martens, John A Foekens, Arzu Umar

Methods Mol Biol· November 2011

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Identification of a putative protein profile associated with tamoxifen therapy resistance in breast cancer.
Arzu Umar, Hyuk Kang, Annemieke M Timmermans, Maxime P Look, Marion E Meijer-van Gelder

Mol Cell Proteomics· June 2009

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High-throughput proteomics of breast carcinoma cells: a focus on FTICR-MS.
Arzu Umar, Malgorzata Jaremko, Peter C Burgers, Theo M Luider, John A Foekens

Expert Rev Proteomics· June 2008

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NanoLC-FT-ICR MS improves proteome coverage attainable for approximately 3000 laser-microdissected breast carcinoma cells.
Arzu Umar, Theo M Luider, John A Foekens, Ljiljana Pasa-Tolić

Proteomics· January 2007

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Method optimisation for peptide profiling of microdissected breast carcinoma tissue by matrix-assisted laser desorption/ionisation-time of flight and matrix-assisted laser desorption/ionisation-time of flight/time of flight-mass spectrometry.
Arzu Umar, Johannes C H Dalebout, A Mieke Timmermans, John A Foekens, Theo M Luider

Proteomics· July 2005

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