Publications by authors named "Athri D Rathnayake"

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A Tetrahydrobiopterin-Displacing Potent Neuronal Nitric Oxide Synthase Inhibitor with an Unprecedented Binding Mode.
Pathum M Weerawarna, Huiying Li, Athri D Rathnayake, Christine D Hardy, Thomas L Poulos

ACS Med Chem Lett· April 2025

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Broad-Spectrum Cyclopropane-Based Inhibitors of Coronavirus 3C-like Proteases: Biochemical, Structural, and Virological Studies.
Chamandi S Dampalla, Harry Nhat Nguyen, Athri D Rathnayake, Yunjeong Kim, Krishani Dinali Perera

ACS Pharmacol Transl Sci· January 2023

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Structure-Guided Design of Potent Spirocyclic Inhibitors of Severe Acute Respiratory Syndrome Coronavirus-2 3C-like Protease.
Chamandi S Dampalla, Athri D Rathnayake, Anushka C Galasiti Kankanamalage, Yunjeong Kim, Krishani Dinali Perera

J Med Chem· June 2022

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Structure-Guided Design of Potent Inhibitors of SARS-CoV-2 3CL Protease: Structural, Biochemical, and Cell-Based Studies.
Chamandi S Dampalla, Athri D Rathnayake, Krishani Dinali Perera, Abdul-Rahman M Jesri, Harry Nhat Nguyen

J Med Chem· December 2021

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Structure-Guided Design of Conformationally Constrained Cyclohexane Inhibitors of Severe Acute Respiratory Syndrome Coronavirus-2 3CL Protease.
Chamandi S Dampalla, Yunjeong Kim, Naemi Bickmeier, Athri D Rathnayake, Harry Nhat Nguyen

J Med Chem· July 2021

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Structure-Guided Optimization of Dipeptidyl Inhibitors of Norovirus 3CL Protease.
Athri D Rathnayake, Yunjeong Kim, Chamandi S Dampalla, Harry Nhat Nguyen, Abdul-Rahman M Jesri

J Med Chem· October 2020

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3C-like protease inhibitors block coronavirus replication in vitro and improve survival in MERS-CoV-infected mice.
Athri D Rathnayake, Jian Zheng, Yunjeong Kim, Krishani Dinali Perera, Samantha Mackin

Sci Transl Med· August 2020

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Characterization of amino acid substitutions in feline coronavirus 3C-like protease from a cat with feline infectious peritonitis treated with a protease inhibitor.
Krishani Dinali Perera, Athri D Rathnayake, Hongwei Liu, Niels C Pedersen, William C Groutas

Vet Microbiol· October 2019

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Putative structural rearrangements associated with the interaction of macrocyclic inhibitors with norovirus 3CL protease.
Anushka C Galasiti Kankanamalage, Pathum M Weerawarna, Athri D Rathnayake, Yunjeong Kim, Nurjahan Mehzabeen

Proteins· July 2019

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Antiviral Drug Discovery: Norovirus Proteases and Development of Inhibitors.
Kyeong-Ok Chang, Yunjeong Kim, Scott Lovell, Athri D Rathnayake, William C Groutas

Viruses· February 2019

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Protease inhibitors broadly effective against feline, ferret and mink coronaviruses.
Krishani Dinali Perera, Anushka C Galasiti Kankanamalage, Athri D Rathnayake, Amanda Honeyfield, William Groutas

Antiviral Res· December 2018

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Structure-guided design of potent and permeable inhibitors of MERS coronavirus 3CL protease that utilize a piperidine moiety as a novel design element.
Anushka C Galasiti Kankanamalage, Yunjeong Kim, Vishnu C Damalanka, Athri D Rathnayake, Anthony R Fehr

Eur J Med Chem· April 2018

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Structure-guided design, synthesis and evaluation of oxazolidinone-based inhibitors of norovirus 3CL protease.
Vishnu C Damalanka, Yunjeong Kim, Anushka C Galasiti Kankanamalage, Athri D Rathnayake, Nurjahan Mehzabeen

Eur J Med Chem· January 2018

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Design, Synthesis, and Evaluation of Novel Prodrugs of Transition State Inhibitors of Norovirus 3CL Protease.
Anushka C Galasiti Kankanamalage, Yunjeong Kim, Athri D Rathnayake, Kevin R Alliston, Michelle M Butler

J Med Chem· July 2017

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Structure-based exploration and exploitation of the S subsite of norovirus 3CL protease in the design of potent and permeable inhibitors.
Anushka C Galasiti Kankanamalage, Yunjeong Kim, Athri D Rathnayake, Vishnu C Damalanka, Pathum M Weerawarna

Eur J Med Chem· January 2017

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