Publications by authors named "Awadhesh Pandit"

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EFFICIENT RIBOSOMAL RNA DEPLETION FROM TOTAL RNA FOR NEXT-GENERATION SEQUENCING APPLICATIONS.
Omkar Koppaka, Shweta Tandon, Ankita Chodankar, Awadhesh Pandit, Baskar Bakthavachalu

Wellcome Open Res· May 2025

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On the road to losing connectivity: Faecal samples provide genome-wide insights into anthropogenic impacts on two large herbivore species in central India.
Abhinav Tyagi, Nidhi Yadav, Awadhesh Pandit, Uma Ramakrishnan

Mol Ecol· August 2024

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Reprogramming in Gene Expression Network under Butanol Stress Abrogates Hyphal Development.
Rajesh Anand, Mohammad Kashif, Awadhesh Pandit, Ram Babu, Agam P Singh

Int J Mol Sci· December 2023

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Optimized protocol for assay for transposase-accessible chromatin by sequencing (ATAC-seq) from Drosophila melanogaster brain tissue.
Jasmine Kaur Dhall, Nandashree Kasturacharya, Awadhesh Pandit, Lakshminarayanan Cp

STAR Protoc· April 2023

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High-quality single amplicon sequencing method for illumina MiSeq platform using pool of 'N' (0-10) spacer-linked target specific primers without PhiX spike-in.
Tejali Naik, Mohak Sharda, Lakshminarayanan C P, Kumar Virbhadra, Awadhesh Pandit

BMC Genomics· March 2023

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Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries.
Zubairul Islam, Bharath Saravanan, Kaivalya Walavalkar, Umer Farooq, Anurag Kumar Singh, Awadhesh Pandit

Genome Res· January 2023

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Immune profile and responses of a novel dengue DNA vaccine encoding an EDIII-NS1 consensus design based on Indo-African sequences.
Arun Sankaradoss, Suraj Jagtap, Junaid Nazir, Shefta E Moula, Ayan Modak, Awadhesh Pandit

Mol Ther· May 2022

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Degradome comparison between wild and cultivated rice identifies differential targeting by miRNAs.
Chenna Swetha, Anushree Narjala, Awadhesh Pandit, Varsha Tirumalai, P V Shivaprasad

BMC Genomics· January 2022

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CDX2 inducible microRNAs sustain colon cancer by targeting multiple DNA damage response pathway factors.
Swati Priya, Ekjot Kaur, Swati Kulshrestha, Awadhesh Pandit, Isabelle Gross

J Cell Sci· August 2021

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Antimicrobial Resistance Profiling and Phylogenetic Analysis of Clinical Isolates From Kenya in a Resource-Limited Setting.
Meshack Juma, Arun Sankaradoss, Redcliff Ndombi, Patrick Mwaura, Tina Damodar, Awadhesh Pandit

Front Microbiol· July 2021

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Redefining genetic essentiality in Mycobacterium tuberculosis.
Saniya Patil, Aseem Palande, Tejan Lodhiya, Awadhesh Pandit, Raju Mukherjee

Gene· January 2021

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A genome engineering resource to uncover principles of cellular organization and tissue architecture by lipid signaling.
Deepti Trivedi, Vinitha Cm, Karishma Bisht, Vishnu Janardan, Awadhesh Pandit

Elife· December 2020

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miR828 and miR858 regulate VvMYB114 to promote anthocyanin and flavonol accumulation in grapes.
Varsha Tirumalai, Chenna Swetha, Ashwin Nair, Awadhesh Pandit, Padubidri V Shivaprasad

J Exp Bot· September 2019

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Isolation and molecular characterization of dengue virus clinical isolates from pediatric patients in New Delhi.
Meenakshi Kar, Amul Nisheetha, Anuj Kumar, Suraj Jagtap, Jitendra Shinde, Awadhesh Pandit

Int J Infect Dis· July 2019

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Single nucleotide polymorphism in sugar pathway and disease resistance genes in sugarcane.
Swarup K Parida, Sanjay Kalia, Awadhesh Pandit, Preetam Nayak, Ram Kushal Singh

Plant Cell Rep· August 2016

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Rifampicin reduces advanced glycation end products and activates DAF-16 to increase lifespan in Caenorhabditis elegans.
Sandeep Golegaonkar, Syed S Tabrez, Awadhesh Pandit, Shalini Sethurathinam, Mashanipalya G Jagadeeshaprasad

Aging Cell· June 2015

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PHA-4/FOXA-regulated microRNA feed forward loops during Caenorhabditis elegans dietary restriction.
Awadhesh Pandit, Vaibhav Jain, Neeraj Kumar, Arnab Mukhopadhyay

Aging (Albany NY)· October 2014

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The first draft of the pigeonpea genome sequence.
Nagendra K Singh, Deepak K Gupta, Pawan K Jayaswal, Ajay K Mahato, Sutapa Dutta, Awadhesh Pandit

J Plant Biochem Biotechnol· October 2011

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Functionally relevant microsatellites in sugarcane unigenes.
Swarup K Parida, Awadhesh Pandit, Kishor Gaikwad, Tilak R Sharma, Prem Shankar Srivastava

BMC Plant Biol· November 2010

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Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryza sativa L.).
Awadhesh Pandit, Vandna Rai, Subhashis Bal, Shikha Sinha, Vinod Kumar

Mol Genet Genomics· August 2010

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Informative genomic microsatellite markers for efficient genotyping applications in sugarcane.
Swarup K Parida, Sanjay K Kalia, Sunita Kaul, Vivek Dalal, G Hemaprabha, Awadhesh Pandit

Theor Appl Genet· January 2009

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Single-copy genes define a conserved order between rice and wheat for understanding differences caused by duplication, deletion, and transposition of genes.
Nagendra K Singh, Vivek Dalal, Kamlesh Batra, Binay K Singh, G Chitra, Awadhesh Pandit

Funct Integr Genomics· January 2007

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