Publications by authors named "Aya Okuda"

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Mechanistic Modeling of Amyloid Oligomer and Protofibril Formation in Bovine Insulin.
Keisuke Yuzu, Hiroshi Imamura, Takuro Nozaki, Yuki Fujii, Shaymaa Mohamed Mohamed Badawy, Aya Okuda

J Mol Biol· March 2024

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Structural and Dynamic Changes of Nucleosome upon GATA3 Binding.
Hisashi Ishida, Atsushi Matsumoto, Hiroki Tanaka, Aya Okuda, Ken Morishima

J Mol Biol· December 2023

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Roles of lysophosphatidic acid (LPA) receptor-2 (LPA) in the regulation of cellular responses induced by X-ray irradiation and hydrogen peroxide in pancreatic cancer cells.
Aya Okuda, Miwa Takai, Rio Kurisu, Miyu Takamoto, Hiroko Ikeda

Int J Radiat Biol· November 2023

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Characterization of K-binding factor involved in water-soluble complex of menaquinone-7 produced by Bacillus subtilis natto.
Toshiyuki Chatake, Yasuhide Yanagisawa, Risa Murakami, Tadanori Ohsugi, Hiroyuki Sumi, Aya Okuda

J Biochem· September 2023

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Effects of LPA receptor-mediated signaling on the modulation of cellular functions of pancreatic cancer cells cultured in fibroblast supernatants under hypoxic conditions.
Miwa Takai, Aya Okuda, Yuka Amano, Narumi Yashiro, Koki Hara

J Bioenerg Biomembr· June 2023

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Efficient Multiple Domain Ligation for Proteins Using Asparaginyl Endopeptidase by Selection of Appropriate Ligation Sites Based on Steric Hindrance.
Aya Okuda, Masahiro Shimizu, Rintaro Inoue, Reiko Urade, Masaaki Sugiyama

Angew Chem Int Ed Engl· January 2023

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Extracting time series matching a small-angle X-ray scattering profile from trajectories of molecular dynamics simulations.
Masahiro Shimizu, Aya Okuda, Ken Morishima, Rintaro Inoue, Nobuhiro Sato

Sci Rep· June 2022

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Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach.
Yasuhiro Yunoki, Atsushi Matsumoto, Ken Morishima, Anne Martel, Lionel Porcar, Aya Okuda

Commun Biol· March 2022

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Solution structure of multi-domain protein ER-60 studied by aggregation-free SAXS and coarse-grained-MD simulation.
Aya Okuda, Masahiro Shimizu, Ken Morishima, Rintaro Inoue, Nobuhiro Sato

Sci Rep· March 2021

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Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome.
Rina Hirano, Yasuhiro Arimura, Tomoya Kujirai, Mikihiro Shibata, Aya Okuda

Commun Biol· February 2021

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Deuteration Aiming for Neutron Scattering.
Aya Okuda, Rintaro Inoue, Ken Morishima, Tomohide Saio, Yasuhiro Yunoki

Biophys Physicobiol· February 2021

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Elucidation of the mechanism of subunit exchange in αB crystallin oligomers.
Rintaro Inoue, Yusuke Sakamaki, Takumi Takata, Kathleen Wood, Ken Morishima, Aya Okuda

Sci Rep· January 2021

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Dynamics of proteins with different molecular structures under solution condition.
Rintaro Inoue, Takashi Oda, Hiroshi Nakagawa, Taiki Tominaga, Tomohide Saio, Aya Okuda

Sci Rep· December 2020

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A novel soybean protein disulphide isomerase family protein possesses dithiol oxidation activity: identification and characterization of GmPDIL6.
Aya Okuda, Motonori Matsusaki, Taro Masuda, Ken Morishima, Nobuhiro Sato

J Biochem· October 2020

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Integral approach to biomacromolecular structure by analytical-ultracentrifugation and small-angle scattering.
Ken Morishima, Aya Okuda, Rintaro Inoue, Nobuhiro Sato, Yosuke Miyamoto

Commun Biol· June 2020

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Regulation of plant ER oxidoreductin 1 (ERO1) activity for efficient oxidative protein folding.
Motonori Matsusaki, Aya Okuda, Koichi Matsuo, Kunihiko Gekko, Taro Masuda

J Biol Chem· December 2019

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Newly developed Laboratory-based Size exclusion chromatography Small-angle x-ray scattering System (La-SSS).
Rintaro Inoue, Tatsuo Nakagawa, Ken Morishima, Nobuhiro Sato, Aya Okuda

Sci Rep· August 2019

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Identification and characterization of GmPDIL7, a soybean ER membrane-bound protein disulfide isomerase family protein.
Aya Okuda, Motonori Matsusaki, Taro Masuda, Reiko Urade

FEBS J· February 2017

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Suppressed Production of Soluble Fms-Like Tyrosine Kinase-1 Contributes to Myocardial Remodeling and Heart Failure.
Ayako Seno, Yukiji Takeda, Masaru Matsui, Aya Okuda, Tomoya Nakano

Hypertension· September 2016

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Cooperative Protein Folding by Two Protein Thiol Disulfide Oxidoreductases and 1 in Soybean.
Motonori Matsusaki, Aya Okuda, Taro Masuda, Katsunori Koishihara, Ryuta Mita

Plant Physiol· February 2016

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Disulfide bond formation activity of soybean quiescin sulfhydryl oxidase.
Aya Okuda, Motonori Matsusaki, Yuki Higashino, Taro Masuda, Reiko Urade

FEBS J· December 2014

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Olanzapine stimulates proliferation but inhibits differentiation in rat oligodendrocyte precursor cell cultures.
Sohei Kimoto, Aya Okuda, Michihiro Toritsuka, Takahira Yamauchi, Manabu Makinodan, Hiroaki Okuda

Prog Neuropsychopharmacol Biol Psychiatry· December 2011

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Chondroitin sulfate demarcates astrocytic territories in the mammalian cerebral cortex.
Noriko Horii-Hayashi, Kouko Tatsumi, Yumiko Matsusue, Hiroaki Okuda, Aya Okuda

Neurosci Lett· October 2010

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Simultaneous on/off regulation of transgenes located on a mammalian chromosome with Cre-expressing adenovirus and a mutant loxP.
Saki Kondo, Aya Okuda, Hiromi Sato, Naoto Tachikawa, Miho Terashima

Nucleic Acids Res· July 2003

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