Publications by authors named "Barbara Engelhardt"

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: simulations for benchmarking nascent RNA sequencing experiments.
Ezequiel Calvo-Roitberg, Jesse W Lehman, Edric Tam, Shaimae Elhajjajy, Barbara E Engelhardt

bioRxiv· November 2025

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-spaces: Mixtures of Gaussian latent variable models.
Nicholas Markarian, Barbara E Engelhardt, Niles A Pierce, Paul W Sternberg, Lior Pachter

bioRxiv· November 2025

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Integrated 'omics analysis reveals human milk oligosaccharide biosynthesis programs in human lactocytes.
Sarah Kate Nyquist, Laasya Devi Annepureddy, Kristija Sejane, Annalee Furst, G Devon Trahan, Barbara E Engelhardt

iScience· September 2025

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Genomic characterization of normal and aberrant human milk production.
Yarden Golan, Sarah K Nyquist, Zhe Liu, Dena Ennis, Jingjing Zhao, Barbara E Engelhardt

Sci Adv· September 2025

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CONTRASTIVE LINEAR REGRESSION.
Boyang Zhang, Sarah Nyquist, Andrew Jones, Barbara E Engelhardt, Didong Li

Ann Appl Stat· September 2025

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Live-cell analyses with unsegmented images to study cancer cell response to modified T cell therapy.
Leo Epstein, Adam C Weiner, Archit Verma, Mozhgan Saedi, Julia Carnevale, Barbara E Engelhardt

bioRxiv· June 2025

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Genomic characterization of normal and aberrant human milk production.
Yarden Golan, Sarah K Nyquist, Zhe Liu, Dena Ennis, Jingjing Zhao, Barbara E Engelhardt

medRxiv· June 2025

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Integrated 'omics analysis reveals human milk oligosaccharide biosynthesis programs in human lactocytes.
Sarah Kate Nyquist, Laasya Devi Annepureddy, Kristija Sejane, Annalee Furst, G Devon Trahan, Barbara E Engelhardt

bioRxiv· March 2025

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Bayesian Multi-Group Gaussian Process Models for Heterogeneous Group-Structured Data.
Didong Li, Andrew Jones, Sudipto Banerjee, Barbara Engelhardt

J Mach Learn Res· January 2025

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Understanding TCR T cell knockout behavior using interpretable machine learning.
Marcus Blennemann, Archit Verma, Stefanie Bachl, Julia Carnevale, Barbara E Engelhardt

Pac Symp Biocomput· December 2024

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Cellular behavior analysis from live-cell imaging of TCR T cell-cancer cell interactions.
Archit Verma, Changhua Yu, Stefanie Bachl, Ivan Lopez, Morgan Schwartz, Barbara E Engelhardt

bioRxiv· November 2024

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PROBABILISTIC CONTRASTIVE DIMENSION REDUCTION FOR CASE-CONTROL STUDY DATA.
Didong Li, Andrew Jones, Barbara Engelhardt

Ann Appl Stat· September 2024

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Answering open questions in biology using spatial genomics and structured methods.
Siddhartha G Jena, Archit Verma, Barbara E Engelhardt

BMC Bioinformatics· September 2024

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Optimizing the design of spatial genomic studies.
Andrew Jones, Diana Cai, Didong Li, Barbara E Engelhardt

Nat Commun· June 2024

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Alignment of spatial genomics data using deep Gaussian processes.
Andrew Jones, F William Townes, Didong Li, Barbara E Engelhardt

Nat Methods· September 2023

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Nonnegative spatial factorization applied to spatial genomics.
F William Townes, Barbara E Engelhardt

Nat Methods· February 2023

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Optimizing the design of spatial genomic studies.
Andrew Jones, Diana Cai, Didong Li, Barbara E Engelhardt

bioRxiv· January 2023

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A Poisson reduced-rank regression model for association mapping in sequencing data.
Tiana Fitzgerald, Andrew Jones, Barbara E Engelhardt

BMC Bioinformatics· December 2022

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CONTRASTIVE LATENT VARIABLE MODELING WITH APPLICATION TO CASE-CONTROL SEQUENCING EXPERIMENTS.
Andrew Jones, F William Townes, Didong Li, Barbara E Engelhardt

Ann Appl Stat· September 2022

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Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues.
Ariel Dh Gewirtz, F William Townes, Barbara E Engelhardt

Life Sci Alliance· August 2022

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Towards 'end-to-end' analysis and understanding of biological timecourse data.
Siddhartha G Jena, Alexander G Goglia, Barbara E Engelhardt

Biochem J· June 2022

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Guiding Efficient, Effective, and Patient-Oriented Electrolyte Replacement in Critical Care: An Artificial Intelligence Reinforcement Learning Approach.
Niranjani Prasad, Aishwarya Mandyam, Corey Chivers, Michael Draugelis, C William Hanson, Barbara E Engelhardt

J Pers Med· April 2022

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Brain kernel: A new spatial covariance function for fMRI data.
Anqi Wu, Samuel A Nastase, Christopher A Baldassano, Nicholas B Turk-Browne, Kenneth A Norman, Barbara E Engelhardt

Neuroimage· December 2021

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Hierarchical Gaussian Processes and Mixtures of Experts to Model COVID-19 Patient Trajectories.
Sunny Cui, Elizabeth C Yoo, Didong Li, Krzysztof Laudanski, Barbara E Engelhardt

Pac Symp Biocomput· December 2021

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A self-exciting point process to study multicellular spatial signaling patterns.
Archit Verma, Siddhartha G Jena, Danielle R Isakov, Kazuhiro Aoki, Jared E Toettcher, Barbara E Engelhardt

Proc Natl Acad Sci U S A· August 2021

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