Publications by authors named "Barbara Frewen"

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Hybrid data acquisition and processing strategies with increased throughput and selectivity: pSMART analysis for global qualitative and quantitative analysis.
Amol Prakash, Scott Peterman, Shadab Ahmad, David Sarracino, Barbara Frewen

J Proteome Res· December 2014

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Crux: rapid open source protein tandem mass spectrometry analysis.
Sean McIlwain, Kaipo Tamura, Attila Kertesz-Farkas, Charles E Grant, Benjamin Diament, Barbara Frewen

J Proteome Res· October 2014

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A cross-platform toolkit for mass spectrometry and proteomics.
Matthew C Chambers, Brendan Maclean, Robert Burke, Dario Amodei, Daniel L Ruderman, Barbara Frewen

Nat Biotechnol· October 2012

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Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation.
Birgit Schilling, Matthew J Rardin, Brendan X MacLean, Anna M Zawadzka, Barbara E Frewen

Mol Cell Proteomics· May 2012

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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments.
Brendan MacLean, Daniela M Tomazela, Nicholas Shulman, Matthew Chambers, Gregory L Finney, Barbara Frewen

Bioinformatics· April 2010

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Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method development.
Amol Prakash, Daniela M Tomazela, Barbara Frewen, Brendan Maclean, Gennifer Merrihew

J Proteome Res· June 2009

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High quality catalog of proteotypic peptides from human heart.
Kelli G Kline, Barbara Frewen, Michael R Bristow, Michael J Maccoss, Christine C Wu

J Proteome Res· November 2008

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Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations.
Gennifer E Merrihew, Colleen Davis, Brent Ewing, Gary Williams, Lukas Käll, Barbara E Frewen

Genome Res· October 2008

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Using BiblioSpec for creating and searching tandem MS peptide libraries.
Barbara Frewen, Michael J MacCoss

Curr Protoc Bioinformatics· December 2007

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Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.
Barbara E Frewen, Gennifer E Merrihew, Christine C Wu, William Stafford Noble, Michael J MacCoss

Anal Chem· August 2006

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