Publications by authors named "Barry G Hall"

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Building Phylogenetic Trees From Genome Sequences With kSNP4.
Barry G Hall, Jeremiah Nisbet

Mol Biol Evol· November 2023

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Estimating microbial population data from optical density.
Portia Mira, Pamela Yeh, Barry G Hall

PLoS One· October 2022

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Stress proteins as predictors of COVID-19 outcomes.
Barry G Hall

Cell Stress Chaperones· March 2021

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Statistical Package for Growth Rates Made Easy.
Portia Mira, Miriam Barlow, Juan C Meza, Barry G Hall

Mol Biol Evol· December 2017

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Population Dynamics of Staphylococcus aureus in Cystic Fibrosis Patients To Determine Transmission Events by Use of Whole-Genome Sequencing.
Andrea Ankrum, Barry G Hall

J Clin Microbiol· July 2017

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Effects of sequence diversity and recombination on the accuracy of phylogenetic trees estimated by kSNP.
Barry G Hall

Cladistics· February 2016

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kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome.
Shea N Gardner, Tom Slezak, Barry G Hall

Bioinformatics· September 2015

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SNP-associations and phenotype predictions from hundreds of microbial genomes without genome alignments.
Barry G Hall

PLoS One· June 2015

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When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes.
Shea N Gardner, Barry G Hall

PLoS One· September 2014

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Using complete genome comparisons to identify sequences whose presence accurately predicts clinically important phenotypes.
Barry G Hall, Heliodoro Cardenas, Miriam Barlow

PLoS One· March 2014

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Growth rates made easy.
Barry G Hall, Hande Acar, Anna Nandipati, Miriam Barlow

Mol Biol Evol· January 2014

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Clustering acinetobacter strains by optical mapping.
Barry G Hall, Benjamin C Kirkup, Mathew C Riley, Miriam Barlow

Genome Biol Evol· December 2013

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Designing antibiotic cycling strategies by determining and understanding local adaptive landscapes.
Christiane P Goulart, Mentar Mahmudi, Kristina A Crona, Stephen D Jacobs, Marcelo Kallmann, Barry G Hall

PLoS One· August 2013

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Building phylogenetic trees from molecular data with MEGA.
Barry G Hall

Mol Biol Evol· May 2013

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α-Galacturonidase(s): a new class of Family 4 glycoside hydrolases with strict specificity and a unique CHEV active site motif.
John Thompson, Andreas Pikis, Jamie Rich, Barry G Hall, Stephen G Withers

FEBS Lett· March 2013

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Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars.
Azad Ahmed, Josh Earl, Adam Retchless, Sharon L Hillier, Lorna K Rabe, Barry G Hall

J Bacteriol· August 2012

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Remembrances of Walter M. Fitch.
Barry G Hall, Francisco J Ayala, Marcella A McClure

Mol Biol Evol· December 2011

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Towards the molecular epidemiology of Mycobacterium leprae: strategies, successes, and shortcomings.
Stephen J Salipante, Barry G Hall

Infect Genet Evol· October 2011

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Inadequacies of minimum spanning trees in molecular epidemiology.
Stephen J Salipante, Barry G Hall

J Clin Microbiol· October 2011

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Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome model.
Robert Boissy, Azad Ahmed, Benjamin Janto, Josh Earl, Barry G Hall

BMC Genomics· April 2011

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Molecular epidemiology of Mycobacterium leprae as determined by structure-neighbor clustering.
Barry G Hall, Stephen J Salipante

J Clin Microbiol· June 2010

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A Mycobacterium leprae VNTR database.
Barry G Hall

Lepr Rev· June 2010

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Pan-genome analysis provides much higher strain typing resolution than multi-locus sequence typing.
Barry G Hall, Garth D Ehrlich, Fen Z Hu

Microbiology (Reading)· April 2010

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Evolution and biochemistry of family 4 glycosidases: implications for assigning enzyme function in sequence annotations.
Barry G Hall, Andreas Pikis, John Thompson

Mol Biol Evol· November 2009

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Molecular epidemiology of Mycobacterium leprae: a solid beginning.
Barry G Hall

Lepr Rev· September 2009

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