Publications by authors named "Bede Constantinides"

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Characterizing the performance of an antibiotic resistance prediction tool, gnomonicus, using a diverse test set of 2,663 samples.
Jeremy Westhead, Catriona S Baker, Marc Brouard, Matthew Colpus, Bede Constantinides

Microb Genom· December 2025

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Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny.
Martin Hunt, Angie S Hinrichs, Daniel Anderson, Lily Karim, Bethany L Dearlove, Bede Constantinides

bioRxiv· November 2024

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Hostile: accurate decontamination of microbial host sequences.
Bede Constantinides, Martin Hunt, Derrick W Crook

Bioinformatics· December 2023

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Respiratory virome profiles reflect antiviral immune responses.
Judit Rovira Rubió, Spyridon Megremis, Maria Pasioti, John Lakoumentas, Bede Constantinides

Allergy· May 2023

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Respiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma.
Spyridon Megremis, Bede Constantinides, Paraskevi Xepapadaki, Chuan Fu Yap, Alexandros G Sotiropoulos

Sci Rep· May 2023

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A burst of genomic innovation at the origin of placental mammals mediated embryo implantation.
Alysha S Taylor, Haidee Tinning, Vladimir Ovchinnikov, Jessica Edge, William Smith, Bede Constantinides

Commun Biol· April 2023

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Constructing custom-made radiotranscriptomic signatures of vascular inflammation from routine CT angiograms: a prospective outcomes validation study in COVID-19.
Christos P Kotanidis, Cheng Xie, Donna Alexander, Jonathan C L Rodrigues, Katie Burnham, Bede Constantinides

Lancet Digit Health· October 2022

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Antibody escape of SARS-CoV-2 Omicron BA.4 and BA.5 from vaccine and BA.1 serum.
Aekkachai Tuekprakhon, Rungtiwa Nutalai, Aiste Dijokaite-Guraliuc, Daming Zhou, Helen M Ginn, Bede Constantinides

Cell· July 2022

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ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads.
Martin Hunt, Jeremy Swann, Bede Constantinides, Philip W Fowler, Zamin Iqbal

Bioinformatics· June 2022

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Potent cross-reactive antibodies following Omicron breakthrough in vaccinees.
Rungtiwa Nutalai, Daming Zhou, Aekkachai Tuekprakhon, Helen M Ginn, Piyada Supasa, Bede Constantinides

Cell· June 2022

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An Observational Cohort Study on the Incidence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and B.1.1.7 Variant Infection in Healthcare Workers by Antibody and Vaccination Status.
Sheila F Lumley, Gillian Rodger, Bede Constantinides, Nicholas Sanderson, Kevin K Chau

Clin Infect Dis· April 2022

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SARS-CoV-2 Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses.
Wanwisa Dejnirattisai, Jiandong Huo, Daming Zhou, Jiří Zahradník, Piyada Supasa, Bede Constantinides

Cell· February 2022

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Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses.
Wanwisa Dejnirattisai, Jiandong Huo, Daming Zhou, Jiří Zahradník, Piyada Supasa, Bede Constantinides

bioRxiv· December 2021

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Epidemiological data and genome sequencing reveals that nosocomial transmission of SARS-CoV-2 is underestimated and mostly mediated by a small number of highly infectious individuals.
Sheila F Lumley, Bede Constantinides, Nicholas Sanderson, Gillian Rodger, Teresa L Street

J Infect· October 2021

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Flanker: a tool for comparative genomics of gene flanking regions.
William Matlock, Samuel Lipworth, Bede Constantinides, Timothy E A Peto, A Sarah Walker

Microb Genom· September 2021

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The role of CAPG in molecular communication between the embryo and the uterine endometrium: Is its function conserved in species with different implantation strategies?
Haidee Tinning, Alysha Taylor, Dapeng Wang, Bede Constantinides, Ruth Sutton

FASEB J· August 2020

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Genomic surveillance of and spp. in hospital sink drains and patients.
Bede Constantinides, Kevin K Chau, T Phuong Quan, Gillian Rodger, Monique I Andersson

Microb Genom· July 2020

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The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences.
Avraam Tapinos, Bede Constantinides, My V T Phan, Samaneh Kouchaki, Matthew Cotten

Viruses· April 2019

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Detecting macroecological patterns in bacterial communities across independent studies of global soils.
Kelly S Ramirez, Christopher G Knight, Mattias de Hollander, Francis Q Brearley, Bede Constantinides

Nat Microbiol· February 2018

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Challenges in the analysis of viral metagenomes.
Rebecca Rose, Bede Constantinides, Avraam Tapinos, David L Robertson, Mattia Prosperi

Virus Evol· July 2016

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The khmer software package: enabling efficient nucleotide sequence analysis.
Michael R Crusoe, Hussien F Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Bede Constantinides

F1000Res· November 2015

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