Publications by authors named "Beibei Ru"

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Cancer immunology data engine reveals secreted AOAH as a potential immunotherapy.
Lanqi Gong, Jie Luo, Emily Yang, Beibei Ru, Ziyang Qi

Cell· September 2025

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GPRC5A promotes lung colonization of esophageal squamous cell carcinoma.
Hongyu Zhou, Licheng Tan, Baifeng Zhang, Dora Lai Wan Kwong, Ching Ngar Wong, Beibei Ru, Yanru Qin

Nat Commun· November 2024

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Identification and Characterization of Metastasis-Initiating Cells in ESCC in a Multi-Timepoint Pulmonary Metastasis Mouse Model.
Ching Ngar Wong, Yu Zhang, Beibei Ru, Songna Wang, Hongyu Zhou, Jiarun Lin, Yanru Qin

Adv Sci (Weinh)· August 2024

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Estimation of cell lineages in tumors from spatial transcriptomics data.
Beibei Ru, Jinlin Huang, Yu Zhang, Kenneth Aldape, Peng Jiang

Nat Commun· February 2023

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Editorial: Phage display: Technique and applications.
Jian Huang, Yoichi Takakusagi, Beibei Ru

Front Microbiol· December 2022

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Discover immunotherapy biomarkers from single-cell cytometry data.
Beibei Ru, Peng Jiang

Patterns (N Y)· December 2021

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Systematic investigation of cytokine signaling activity at the tissue and single-cell levels.
Peng Jiang, Yu Zhang, Beibei Ru, Yuan Yang, Trang Vu, Lingrui Liu, Eytan Ruppin

Nat Methods· October 2021

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TISIDB: an integrated repository portal for tumor-immune system interactions.
Beibei Ru, Ching Ngar Wong, Yin Tong, Jia Yi Zhong, Sophia Shek Wa Zhong

Bioinformatics· October 2019

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A framework for identifying dysregulated chromatin regulators as master regulators in human cancer.
Beibei Ru, Jianlong Sun, Qingzheng Kang, Yin Tong, Jiangwen Zhang

Bioinformatics· June 2019

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Sertoli cell–specific coxsackievirus and adenovirus receptor regulates cell adhesion and gene transcription via β-catenin inactivation and Cdc42 activation.
Kun Huang, Beibei Ru, Yang Zhang, Wai-Lung Chan, Sheung-Ching Chow

FASEB J· June 2019

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MR4Cancer: a web server prioritizing master regulators for cancer.
Beibei Ru, Yin Tong, Jiangwen Zhang

Bioinformatics· February 2019

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Recent advances in research on aspartate β-hydroxylase (ASPH) in pancreatic cancer: A brief update.
Guofang Hou, Boran Xu, Yanghui Bi, Chuanlin Wu, Beibei Ru

Bosn J Basic Med Sci· November 2018

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miRNACancerMAP: an integrative web server inferring miRNA regulation network for cancer.
Yin Tong, Beibei Ru, Jiangwen Zhang

Bioinformatics· September 2018

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MICMIC: identification of DNA methylation of distal regulatory regions with causal effects on tumorigenesis.
Yin Tong, Jianlong Sun, Chi Fat Wong, Qingzheng Kang, Beibei Ru

Genome Biol· June 2018

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CR2Cancer: a database for chromatin regulators in human cancer.
Beibei Ru, Jianlong Sun, Yin Tong, Ching Ngar Wong, Aditi Chandra

Nucleic Acids Res· January 2018

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SABinder: A Web Service for Predicting Streptavidin-Binding Peptides.
Bifang He, Juanjuan Kang, Beibei Ru, Hui Ding, Peng Zhou

Biomed Res Int· February 2017

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6-C-(E-phenylethenyl)naringenin induces cell growth inhibition and cytoprotective autophagy in colon cancer cells.
Yueliang Zhao, Daming Fan, Beibei Ru, Ka-Wing Cheng, Shuting Hu

Eur J Cancer· November 2016

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BDB: biopanning data bank.
Bifang He, Guoshi Chai, Yaocong Duan, Zhiqiang Yan, Liuyang Qiu, Beibei Ru

Nucleic Acids Res· January 2016

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MDC-Analyzer: a novel degenerate primer design tool for the construction of intelligent mutagenesis libraries with contiguous sites.
Lixia Tang, Xiong Wang, Beibei Ru, Hengfei Sun, Jian Huang

Biotechniques· June 2014

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PhD7Faster: predicting clones propagating faster from the Ph.D.-7 phage display peptide library.
Beibei Ru, Peter A C 't Hoen, Fulei Nie, Hao Lin, Feng-Biao Guo

J Bioinform Comput Biol· February 2014

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Epitope mapping of metuximab on CD147 using phage display and molecular docking.
Bifang He, Canquan Mao, Beibei Ru, Hesong Han, Peng Zhou

Comput Math Methods Med· January 2014

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MimoDB 2.0: a mimotope database and beyond.
Jian Huang, Beibei Ru, Ping Zhu, Fulei Nie, Jun Yang

Nucleic Acids Res· January 2012

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Bioinformatics resources and tools for phage display.
Jian Huang, Beibei Ru, Ping Dai

Molecules· January 2011

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MimoDB: a new repository for mimotope data derived from phage display technology.
Beibei Ru, Jian Huang, Ping Dai, Shiyong Li, Zhongkui Xia

Molecules· November 2010

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SAROTUP: scanner and reporter of target-unrelated peptides.
Jian Huang, Beibei Ru, Shiyong Li, Hao Lin, Feng-Biao Guo

J Biomed Biotechnol· June 2010

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