Publications by authors named "Ben D MacArthur"

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Mining higher-order triadic interactions.
Marta Niedostatek, Anthony Baptista, Jun Yamamoto, Jürgen Kurths, Ruben Sanchez Garcia, Ben D MacArthur

Nat Commun· November 2025

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Clinicians must participate in the development of multimodal AI.
Christopher R S Banerji, Aroon Bhardwaj Shah, Ben Dabson, Tapabrata Chakraborti, Vicky Hellon, Ben D MacArthur

EClinicalMedicine· June 2025

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Train clinical AI to reason like a team of doctors.
Christopher R S Banerji, Tapabrata Chakraborti, Aya Abdelsalam Ismail, Florian Ostmann, Ben D MacArthur

Nature· March 2025

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Deep learning as Ricci flow.
Anthony Baptista, Alessandro Barp, Tapabrata Chakraborti, Chris Harbron, Ben D MacArthur

Sci Rep· October 2024

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Charting cellular differentiation trajectories with Ricci flow.
Anthony Baptista, Ben D MacArthur, Christopher R S Banerji

Nat Commun· March 2024

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Clinical AI tools must convey predictive uncertainty for each individual patient.
Christopher R S Banerji, Tapabrata Chakraborti, Chris Harbron, Ben D MacArthur

Nat Med· December 2023

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POT1a deficiency in mesenchymal niches perturbs B-lymphopoiesis.
Kentaro Nakashima, Yuya Kunisaki, Kentaro Hosokawa, Kazuhito Gotoh, Hisayuki Yao, Ben D MacArthur

Commun Biol· September 2023

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An information-theoretic approach to single cell sequencing analysis.
Michael J Casey, Jörg Fliege, Rubén J Sánchez-García, Ben D MacArthur

BMC Bioinformatics· August 2023

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Single-cell RNA-sequence analysis of human bone marrow reveals new targets for isolation of skeletal stem cells using spherical nucleic acids.
Elloise Z Matthews, Stuart Lanham, Kate White, Maria-Eleni Kyriazi, Konstantina Alexaki, Ben D MacArthur

J Tissue Eng· May 2023

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Stem cell biology needs a theory.
Ben D MacArthur

Stem Cell Reports· January 2023

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Transcriptional programming of immunoregulatory responses in human Langerhans cells.
James Davies, Sofia Sirvent, Andres F Vallejo, Kalum Clayton, Gemma Douilhet, Ben D MacArthur

Front Immunol· October 2022

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Resilient government requires data science reform.
Ben D MacArthur, Cosmina L Dorobantu, Helen Z Margetts

Nat Hum Behav· August 2022

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Fluctuations in T cell receptor and pMHC interactions regulate T cell activation.
Joseph R Egan, Enas Abu-Shah, Omer Dushek, Tim Elliott, Ben D MacArthur

J R Soc Interface· February 2022

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The geometry of cell fate.
Ben D MacArthur

Cell Syst· January 2022

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Geometry and symmetry in biochemical reaction systems.
Raffaella Mulas, Rubén J Sánchez-García, Ben D MacArthur

Theory Biosci· October 2021

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Dual dean entrainment with volume ratio modulation for efficient droplet co-encapsulation: extreme single-cell indexing.
Jack Harrington, Luis Blay Esteban, Jonathan Butement, Andres F Vallejo, Simon I R Lane, Ben D MacArthur

Lab Chip· September 2021

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Universal principles of lineage architecture and stem cell identity in renewing tissues.
Philip Greulich, Ben D MacArthur, Cristina Parigini, Rubén J Sánchez-García

Development· June 2021

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An Esrrb and Nanog Cell Fate Regulatory Module Controlled by Feed Forward Loop Interactions.
Ana Sevilla, Dimitri Papatsenko, Amin R Mazloom, Huilei Xu, Ana Vasileva, Ben D MacArthur

Front Cell Dev Biol· March 2021

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Micro RNA Targets in HIV Latency: Insights into Novel Layers of Latency Control.
Ashley I Heinson, Jeongmin Woo, Amey Mukim, Cory H White, Bastiaan Moesker, Ben D Macarthur

AIDS Res Hum Retroviruses· February 2021

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Modeling Stem Cell Fates using Non-Markov Processes.
Patrick S Stumpf, Fumio Arai, Ben D MacArthur

Cell Stem Cell· February 2021

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Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing.
Patrick S Stumpf, Xin Du, Haruka Imanishi, Yuya Kunisaki, Yuichiro Semba, Ben D MacArthur

Commun Biol· December 2020

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Machine Learning of Hematopoietic Stem Cell Divisions from Paired Daughter Cell Expression Profiles Reveals Effects of Aging on Self-Renewal.
Fumio Arai, Patrick S Stumpf, Yoshiko M Ikushima, Kentaro Hosokawa, Aline Roch, Ben D MacArthur

Cell Syst· December 2020

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Heterogeneity and 'memory' in stem cell populations.
Patrick S Stumpf, Fumio Arai, Ben D MacArthur

Phys Biol· November 2020

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Single platelet variability governs population sensitivity and initiates intrinsic heterotypic responses.
Maaike S A Jongen, Ben D MacArthur, Nicola A Englyst, Jonathan West

Commun Biol· June 2020

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Stability and steady state of complex cooperative systems: a diakoptic approach.
Philip Greulich, Ben D MacArthur, Cristina Parigini, Rubén J Sánchez-García

R Soc Open Sci· December 2019

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