Publications by authors named "Ben Ernest"

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Stress-free cell aggregation by using the CEPT cocktail enhances embryoid body and organoid fitness.
Seungmi Ryu, Claire Weber, Pei-Hsuan Chu, Ben Ernest, Vukasin M Jovanovic

Biofabrication· December 2023

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SEQUIN is an R/Shiny framework for rapid and reproducible analysis of RNA-seq data.
Claire Weber, Marissa B Hirst, Ben Ernest, Nicholas J Schaub, Kelli M Wilson

Cell Rep Methods· March 2023

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A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples.
Wanqiu Chen, Yongmei Zhao, Xin Chen, Zhaowei Yang, Xiaojiang Xu, Ben Ernest

Nat Biotechnol· September 2021

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Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing.
Wenming Xiao, Luyao Ren, Zhong Chen, Li Tai Fang, Yongmei Zhao, Ben Ernest

Nat Biotechnol· September 2021

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The essential chloroplast ribosomal protein uL15c interacts with the chloroplast RNA helicase ISE2 and affects intercellular trafficking through plasmodesmata.
Krzysztof Bobik, Jessica C Fernandez, Sara R Hardin, Ben Ernest, Elena E Ganusova

New Phytol· January 2019

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The chloroplast RNA helicase ISE2 is required for multiple chloroplast RNA processing steps in Arabidopsis thaliana.
Krzysztof Bobik, Tyra N McCray, Ben Ernest, Jessica C Fernandez, Katharine A Howell

Plant J· July 2017

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The Circadian Clock Modulates Global Daily Cycles of mRNA Ribosome Loading.
Anamika Missra, Ben Ernest, Tim Lohoff, Qidong Jia, James Satterlee

Plant Cell· September 2015

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The insulator protein Suppressor of Hairy wing is required for proper ring canal development during oogenesis in Drosophila.
Shih-Jui Hsu, Maria P Plata, Ben Ernest, Saghi Asgarifar, Mariano Labrador

Dev Biol· July 2015

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Molecular and metabolic profiles suggest that increased lipid catabolism in adipose tissue contributes to leanness in domestic chickens.
Bo Ji, Jesse L Middleton, Ben Ernest, Arnold M Saxton, Susan J Lamont

Physiol Genomics· May 2014

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MetabR: an R script for linear model analysis of quantitative metabolomic data.
Ben Ernest, Jessica R Gooding, Shawn R Campagna, Arnold M Saxton, Brynn H Voy

BMC Res Notes· October 2012

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Transcriptomic and metabolomic profiling of chicken adipose tissue in response to insulin neutralization and fasting.
Bo Ji, Ben Ernest, Jessica R Gooding, Suchita Das, Arnold M Saxton

BMC Genomics· August 2012

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