Publications by authors named "Ben F Koop"

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Grizzly bear population genomics across a coastal-interior ecotone in British Columbia, Canada.
Lauren H Henson, Kris A Christensen, Ben J G Sutherland, Hollie A Johnson, Bridgett vonHoldt, Ben F Koop

G3 (Bethesda)· December 2025

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Transcription Dynamics and DNA Methylation Responses to Growth Modification.
Kris A Christensen, Étienne Collette, Danielle Perley, Dionne Sakhrani, Annette F Muttray, Ben F Koop

Mar Biotechnol (NY)· June 2025

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The genome assembly of the westslope cutthroat trout, Oncorhynchus lewisi, reveals interspecific chromosomal rearrangements with the rainbow trout, Oncorhynchus mykiss.
Anne-Marie Flores, Kris A Christensen, Theresa Godin, Yniv Palti, Matthew R Campbell, Ben F Koop

G3 (Bethesda)· May 2025

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Masu salmon species complex relationships and sex chromosomes revealed from analyses of the masu salmon (Oncorhynchus masou masou) genome assembly.
Kris A Christensen, Anne-Marie Flores, Jay Joshi, Kiko Shibata, Takafumi Fujimoto, Ben F Koop

G3 (Bethesda)· February 2025

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Revealing the evolutionary history and contemporary population structure of Pacific salmon in the Fraser River through genome resequencing.
Kris A Christensen, Anne-Marie Flores, Dionne Sakhrani, Carlo A Biagi, Robert H Devlin, Ben F Koop

G3 (Bethesda)· October 2024

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Loss of genetic variation and ancestral sex determination system in North American northern pike characterized by whole-genome resequencing.
Hollie A Johnson, Eric B Rondeau, Ben J G Sutherland, David R Minkley, Jong S Leong, Ben F Koop

G3 (Bethesda)· October 2024

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Insights from Hi-C data regarding the Pacific salmon louse (Lepeophtheirus salmonis) sex chromosomes.
Anne-Marie Flores, Kris A Christensen, Ahmed Siah, Ben F Koop

G3 (Bethesda)· July 2024

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Insights from a chum salmon (Oncorhynchus keta) genome assembly regarding whole-genome duplication and nucleotide variation influencing gene function.
Eric B Rondeau, Kris A Christensen, Hollie A Johnson, Dionne Sakhrani, Carlo A Biagi, Ben F Koop

G3 (Bethesda)· August 2023

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Sablefish (Anoplopoma fimbria) chromosome-level genome assembly.
Anne-Marie Flores, Kris A Christensen, Briony Campbell, Ben F Koop, John S Taylor

G3 (Bethesda)· July 2023

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Population-size history inferences from the coho salmon (Oncorhynchus kisutch) genome.
Eric B Rondeau, Kris A Christensen, David R Minkley, Jong S Leong, Michelle T T Chan, Ben F Koop

G3 (Bethesda)· April 2023

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Long-distance migration is a major factor driving local adaptation at continental scale in Coho salmon.
Quentin Rougemont, Amanda Xuereb, Xavier Dallaire, Jean-Sébastien Moore, Eric Normandeau, Ben F Koop

Mol Ecol· February 2023

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Re-evaluating Coho salmon () conservation units in Canada using genomic data.
Amanda Xuereb, Quentin Rougemont, Xavier Dallaire, Jean-Sébastien Moore, Eric Normandeau, Ben F Koop

Evol Appl· November 2022

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An update of the salmon louse (Lepeophtheirus salmonis) reference genome assembly.
Jay Joshi, Anne-Marie Flores, Kris A Christensen, Hollie Johnson, Ahmed Siah, Ben F Koop

G3 (Bethesda)· May 2022

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The Genomic Consistency of the Loss of Anadromy in an Arctic Fish ().
Sarah J Salisbury, Gregory R McCracken, Robert Perry, Donald Keefe, Kara K S Layton, Ben F Koop

Am Nat· May 2022

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The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle.
Kris A Christensen, Eric B Rondeau, Dionne Sakhrani, Carlo A Biagi, Hollie Johnson, Ben F Koop

PLoS One· January 2022

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Correction: The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome.
Kris A Christensen, Eric B Rondeau, David R Minkley, Dionne Sakhrani, Carlo A Biagi, Ben F Koop

PLoS One· December 2021

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The salmon louse genome: Copepod features and parasitic adaptations.
Rasmus Skern-Mauritzen, Ketil Malde, Christiane Eichner, Michael Dondrup, Tomasz Furmanek, Ben F Koop

Genomics· November 2021

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Genomic basis of deep-water adaptation in Arctic Charr (Salvelinus alpinus) morphs.
Tony Kess, J Brian Dempson, Sarah J Lehnert, Kara K S Layton, Anthony Einfeldt, Ben F Koop

Mol Ecol· September 2021

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Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication.
Gareth B Gillard, Lars Grønvold, Line L Røsæg, Matilde Mengkrog Holen, Øystein Monsen, Ben F Koop

Genome Biol· April 2021

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Sexually Dimorphic Growth Stimulation in a Strain of Growth Hormone Transgenic Coho Salmon (Oncorhynchus kisutch).
Michelle T T Chan, Annette Muttray, Dionne Sakhrani, Krista Woodward, Jin-Hyoung Kim, Ben F Koop

Mar Biotechnol (NY)· February 2021

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Retraction: The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly.
Kris A Christensen, Eric B Rondeau, David R Minkley, Jong S Leong, Cameron M Nugent, Ben F Koop

PLoS One· February 2021

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Correction: Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon.
Quentin Rougemont, Jean-Sébastien Moore, Thibault Leroy, Eric Normandeau, Eric B Rondeau, Ben F Koop

PLoS Genet· February 2021

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Assessing the effects of genotype-by-environment interaction on epigenetic, transcriptomic, and phenotypic response in a Pacific salmon.
Kris A Christensen, Jérémy Le Luyer, Michelle T T Chan, Eric B Rondeau, Ben F Koop

G3 (Bethesda)· February 2021

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The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome.
Kris A Christensen, Eric B Rondeau, David R Minkley, Dionne Sakhrani, Carlo A Biagi, Ben F Koop

PLoS One· December 2020

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Limited genetic parallelism underlies recent, repeated incipient speciation in geographically proximate populations of an Arctic fish (Salvelinus alpinus).
Sarah J Salisbury, Gregory R McCracken, Robert Perry, Donald Keefe, Kara K S Layton, Ben F Koop

Mol Ecol· November 2020

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