Publications by authors named "Bence Daniel"

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Skin basal cell carcinomas assemble a pro-tumorigenic spatially organized and self-propagating Trem2+ myeloid niche.
Daniel Haensel, Bence Daniel, Sadhana Gaddam, Cory Pan, Tania Fabo, Jeremy Bjelajac, Anna R Jussila, Fernanda Gonzalez, Nancy Yanzhe Li, Yun Chen

Nat Commun· May 2023

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The transcriptional repressor BLIMP1 enforces TCF-1-dependent and -independent restriction of the memory fate of CD8 T cells.
Maegan K Murphy, Matthew McCullen, Joshua L Deffenbaugh, Andy Y Chen, Joy Pai, Bence Daniel

Immunity· October 2025

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A double-negative prostate cancer subtype is vulnerable to SWI/SNF-targeting degrader molecules.
Phillip Thienger, Irene Paassen, Xiaosai Yao, Philip D Rubin, Marika Lehner, Bence Daniel

bioRxiv· September 2025

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Epiregulon: Single-cell transcription factor activity inference to predict drug response and drivers of cell states.
Tomasz Włodarczyk, Aaron Lun, Diana Wu, Minyi Shi, Xiaofen Ye, Bence Daniel

Nat Commun· August 2025

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TEAD-targeting small molecules induce a cofactor switch to regulate the Hippo pathway.
Alissa D Guarnaccia, Thijs J Hagenbeek, Wendy Lee, Noelyn Kljavin, Meena Choi, Daniel Le, Bence Daniel

Proc Natl Acad Sci U S A· July 2025

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Epigenomic preconditioning of peripheral monocytes determines their transcriptional response to the tumor microenvironment.
Máté Kiss, Laszlo Halasz, Eva Hadadi, Wilhelm K Berger, Petros Tzerpos, Bence Daniel

Genome Med· July 2025

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Cell type-specific purifying selection of synonymous mitochondrial DNA variation.
Caleb A Lareau, Patrick Maschmeyer, Yajie Yin, Jacob C Gutierrez, Ryan S Dhindsa, Bence Daniel

Proc Natl Acad Sci U S A· July 2025

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Clonal lineage tracing of innate immune cells in human cancer.
Vincent Liu, Katalin Sandor, Patrick K Yan, Max Miao, Yajie Yin

bioRxiv· July 2025

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Interferon regulatory factor 4 mediates nonenzymatic IRE1 dependency in multiple myeloma cells.
Ioanna Oikonomidi, Vasumathi Kameswaran, Victoria C Pham, Iratxe Zuazo-Gaztelu, Lauren M Gutgesell, Bence Daniel

PLoS Biol· April 2025

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Cooperation between the Hippo and MAPK pathway activation drives acquired resistance to TEAD inhibition.
Sayantanee Paul, Thijs J Hagenbeek, Julien Tremblay, Vasumathi Kameswaran, Christy Ong, Bence Daniel

Nat Commun· February 2025

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Disparate Pathways for Extrachromosomal DNA Biogenesis and Genomic DNA Repair.
John C Rose, Julia A Belk, Ivy Tsz-Lo Wong, Jens Luebeck, Hudson T Horn, Bence Daniel

Cancer Discov· January 2025

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Distinct epigenomic landscapes underlie tissue-specific memory T cell differentiation.
Frank A Buquicchio, Raissa Fonseca, Patrick K Yan, Fangyi Wang, Maximilien Evrard, Bence Daniel

Immunity· September 2024

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Systematic decoding of cis gene regulation defines context-dependent control of the multi-gene costimulatory receptor locus in human T cells.
Cody T Mowery, Jacob W Freimer, Zeyu Chen, Salvador Casaní-Galdón, Jennifer M Umhoefer, Bence Daniel

Nat Genet· June 2024

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FOXO1 is a master regulator of memory programming in CAR T cells.
Alexander E Doan, Katherine P Mueller, Andy Y Chen, Geoffrey T Rouin, Yingshi Chen, Bence Daniel

Nature· May 2024

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Publisher Correction: FOXO1 is a master regulator of memory programming in CAR T cells.
Alexander E Doan, Katherine P Mueller, Andy Y Chen, Geoffrey T Rouin, Yingshi Chen, Bence Daniel

Nature· May 2024

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Regulation of immune signal integration and memory by inflammation-induced chromosome conformation.
Bence Daniel, Andy Y Chen, Katalin Sandor, Wenxi Zhang, Zhuang Miao

bioRxiv· March 2024

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Inosine induces stemness features in CAR-T cells and enhances potency.
Dorota D Klysz, Carley Fowler, Meena Malipatlolla, Lucille Stuani, Katherine A Freitas, Bence Daniel

Cancer Cell· February 2024

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An Atlas of Promoter Chromatin Modifications and HiChIP Regulatory Interactions in Human Subcutaneous Adipose-Derived Stem Cells.
Laszlo Halasz, Adeline Divoux, Katalin Sandor, Edina Erdos, Bence Daniel

Int J Mol Sci· December 2023

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Latent human herpesvirus 6 is reactivated in CAR T cells.
Caleb A Lareau, Yajie Yin, Katie Maurer, Katalin D Sandor, Bence Daniel

Nature· November 2023

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FOXO1 is a master regulator of CAR T memory programming.
Alexander Doan, Katherine P Mueller, Andy Chen, Geoffrey T Rouin, Bence Daniel

Res Sq· November 2023

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Disparate pathways for extrachromosomal DNA biogenesis and genomic DNA repair.
John C Rose, Ivy Tsz-Lo Wong, Bence Daniel, Matthew G Jones, Kathryn E Yost

bioRxiv· October 2023

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Modular pooled discovery of synthetic knockin sequences to program durable cell therapies.
Franziska Blaeschke, Yan Yi Chen, Ryan Apathy, Bence Daniel, Andy Y Chen, Daniel B Goodman

Cell· September 2023

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Aberrant activation of TCL1A promotes stem cell expansion in clonal haematopoiesis.
Joshua S Weinstock, Jayakrishnan Gopakumar, Bala Bharathi Burugula, Md Mesbah Uddin, Nikolaus Jahn, Bence Daniel

Nature· April 2023

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Inosine Induces Stemness Features in CAR T cells and Enhances Potency.
Dorota D Klysz, Carley Fowler, Meena Malipatlolla, Lucille Stuani, Katherine A Freitas, Bence Daniel

bioRxiv· April 2023

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Macrophage inflammatory and regenerative response periodicity is programmed by cell cycle and chromatin state.
Bence Daniel, Julia A Belk, Stefanie L Meier, Andy Y Chen, Katalin Sandor

Mol Cell· January 2023

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