Publications by authors named "Benjamin A Hall"

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Low-input proteomics identifies vWF as a negative regulator of Tet2 mutant hematopoietic stem cell expansion.
Maria Jassinskaja, Daniel Bode, Monika Gonka, Theodoros I Roumeliotis, Alexander J Hogg, Benjamin A Hall

Cell Rep· December 2025

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OmniPath: integrated knowledgebase for multi-omics analysis.
Dénes Türei, Jonathan Schaul, Nicolàs Palacio-Escat, Balázs Bohár, Yunfan Bai, Benjamin A Hall

Nucleic Acids Res· November 2025

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Understanding large scale sequencing datasets through changes to protein folding.
David Shorthouse, Harris Lister, Gemma S Freeman, Benjamin A Hall

Brief Funct Genomics· September 2024

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Interpreting the effect of mutations to protein binding sites from large-scale genomic screens.
Sara Jamshidi Parvar, Benjamin A Hall, David Shorthouse

Methods· February 2024

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SMAD4 and KCNQ3 alterations are associated with lymph node metastases in oesophageal adenocarcinoma.
Kieran Foley, David Shorthouse, Eric Rahrmann, Lizhe Zhuang, Ginny Devonshire, Benjamin A Hall

Biochim Biophys Acta Mol Basis Dis· January 2024

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Large-scale computational modelling of the M1 and M2 synovial macrophages in rheumatoid arthritis.
Naouel Zerrouk, Rachel Alcraft, Benjamin A Hall, Franck Augé, Anna Niarakis

NPJ Syst Biol Appl· January 2024

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KCNQ potassium channels modulate Wnt activity in gastro-oesophageal adenocarcinomas.
David Shorthouse, Lizhe Zhuang, Eric P Rahrmann, Cassandra Kosmidou, Katherine Wickham Rahrmann, Michael Hall, Benjamin A Hall

Life Sci Alliance· December 2023

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Somatic mutations in facial skin from countries of contrasting skin cancer risk.
Charlotte King, Joanna C Fowler, Irina Abnizova, Roshan K Sood, Michael W J Hall, Benjamin A Hall

Nat Genet· September 2023

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Author Correction: Somatic mutations in facial skin from countries of contrasting skin cancer risk.
Charlotte King, Joanna C Fowler, Irina Abnizova, Roshan K Sood, Michael W J Hall, Benjamin A Hall

Nat Genet· September 2023

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Mutations observed in somatic evolution reveal underlying gene mechanisms.
Michael W J Hall, David Shorthouse, Rachel Alcraft, Philip H Jones, Benjamin A Hall

Commun Biol· July 2023

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Notch1 mutations drive clonal expansion in normal esophageal epithelium but impair tumor growth.
Emilie Abby, Stefan C Dentro, Michael W J Hall, Joanna C Fowler, Swee Hoe Ong, Benjamin A Hall

Nat Genet· February 2023

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The NALCN channel regulates metastasis and nonmalignant cell dissemination.
Eric P Rahrmann, David Shorthouse, Amir Jassim, Linda P Hu, Mariaestela Ortiz, Benjamin A Hall

Nat Genet· December 2022

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Heterogeneity of the cancer cell line metabolic landscape.
David Shorthouse, Jenna Bradley, Susan E Critchlow, Claus Bendtsen, Benjamin A Hall

Mol Syst Biol· November 2022

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HOXA9 has the hallmarks of a biological switch with implications in blood cancers.
Laure Talarmain, Matthew A Clarke, David Shorthouse, Lilia Cabrera-Cosme, David G Kent, Benjamin A Hall

Nat Commun· October 2022

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p53 mutation in normal esophagus promotes multiple stages of carcinogenesis but is constrained by clonal competition.
Kasumi Murai, Stefan Dentro, Swee Hoe Ong, Roshan Sood, David Fernandez-Antoran, Benjamin A Hall

Nat Commun· October 2022

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Tumor-Derived Lactic Acid Modulates Activation and Metabolic Status of Draining Lymph Node Stroma.
Angela Riedel, Moutaz Helal, Luisa Pedro, Jonathan J Swietlik, David Shorthouse, Benjamin A Hall

Cancer Immunol Res· April 2022

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Simulations reveal that different responses to cell crowding determine the expansion of and mutant clones in squamous epithelia.
Vasiliki Kostiou, Michael W J Hall, Philip H Jones, Benjamin A Hall

J R Soc Interface· October 2021

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SARS-CoV-2 Variants Are Selecting for Spike Protein Mutations That Increase Protein Stability.
David Shorthouse, Benjamin A Hall

J Chem Inf Model· September 2021

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Cancer-causing BRCA2 missense mutations disrupt an intracellular protein assembly mechanism to disable genome maintenance.
Miyoung Lee, David Shorthouse, Robert Mahen, Benjamin A Hall, Ashok R Venkitaraman

Nucleic Acids Res· June 2021

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Methods for analysing lineage tracing datasets.
Vasiliki Kostiou, Huairen Zhang, Michael W J Hall, Philip H Jones, Benjamin A Hall

R Soc Open Sci· May 2021

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Computational Saturation Screen Reveals the Landscape of Mutations in Human Fumarate Hydratase.
David Shorthouse, Michael W J Hall, Benjamin A Hall

J Chem Inf Model· April 2021

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Selection of Oncogenic Mutant Clones in Normal Human Skin Varies with Body Site.
Joanna C Fowler, Charlotte King, Christopher Bryant, Michael W J Hall, Roshan Sood, Benjamin A Hall

Cancer Discov· February 2021

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Spatial competition shapes the dynamic mutational landscape of normal esophageal epithelium.
Bartomeu Colom, Maria P Alcolea, Gabriel Piedrafita, Michael W J Hall, Agnieszka Wabik, Benjamin A Hall

Nat Genet· June 2020

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Constructing and Analyzing Computational Models of Cell Signaling with BioModelAnalyzer.
Benjamin A Hall, Jasmin Fisher

Curr Protoc Bioinformatics· March 2020

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A single-progenitor model as the unifying paradigm of epidermal and esophageal epithelial maintenance in mice.
Gabriel Piedrafita, Vasiliki Kostiou, Agnieszka Wabik, Bartomeu Colom, David Fernandez-Antoran, Benjamin A Hall

Nat Commun· March 2020

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