Publications by authors named "Benjamin Billot"

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A probabilistic histological atlas of the human brain for MRI segmentation.
Adrià Casamitjana, Matteo Mancini, Eleanor Robinson, Loïc Peter, Roberto Annunziata, Benjamin Billot

Nature· December 2025

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Benchmarking of deep learning methods for generic MRI multi-organ abdominal segmentation.
Deepa Krishnaswamy, Cosmin Ciausu, Steve Pieper, Ron Kikinis, Benjamin Billot

J Med Imaging (Bellingham)· November 2025

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Fast segmentation with the NextBrain histological atlas.
Oula Puonti, Jackson Nolan, Robert Dicamillo, Yael Balbastre, Adria Casamitjana, Benjamin Billot

bioRxiv· September 2025

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A Contrast-Agnostic Method for Ultra-High Resolution Claustrum Segmentation.
Chiara Mauri, Ryan Fritz, Jocelyn Mora, Benjamin Billot, Juan Eugenio Iglesias

Hum Brain Mapp· August 2025

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Brain MRI signatures across sex and CSF Alzheimer's disease biomarkers.
You Cheng, Yingnan He, Karthik Gopinath, Benjamin Billot, Juan Eugenio Iglesias

Brain Commun· May 2025

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SE(3)-Equivariant and Noise-Invariant 3D Rigid Motion Tracking in Brain MRI.
Benjamin Billot, Neel Dey, Daniel Moyer, Malte Hoffmann, Esra Abaci Turk

IEEE Trans Med Imaging· November 2024

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Synthetic data in generalizable, learning-based neuroimaging.
Karthik Gopinath, Andrew Hoopes, Daniel C Alexander, Steven E Arnold, Yael Balbastre, Benjamin Billot

Imaging Neurosci (Camb)· November 2024

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A next-generation, histological atlas of the human brain and its application to automated brain MRI segmentation.
Adrià Casamitjana, Matteo Mancini, Eleanor Robinson, Loïc Peter, Roberto Annunziata, Benjamin Billot

bioRxiv· September 2024

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Network conditioning for synergistic learning on partial annotations.
Benjamin Billot, Neel Dey, Esra Abaci Turk, P Ellen Grant, Polina Golland

Proc Mach Learn Res· July 2024

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Machine learning of dissection photographs and surface scanning for quantitative 3D neuropathology.
Harshvardhan Gazula, Henry F J Tregidgo, Benjamin Billot, Yael Balbastre, Jonathan Williams-Ramirez

Elife· June 2024

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QUANTIFYING WHITE MATTER HYPERINTENSITY AND BRAIN VOLUMES IN HETEROGENEOUS CLINICAL AND LOW-FIELD PORTABLE MRI.
Pablo Laso, Stefano Cerri, Annabel Sorby-Adams, Jennifer Guo, Farrah Mateen, Benjamin Billot

Proc IEEE Int Symp Biomed Imaging· May 2024

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Linking brain structure, cognition, and sleep: insights from clinical data.
Ruoqi Wei, Wolfgang Ganglberger, Haoqi Sun, Peter N Hadar, Randy L Gollub, Benjamin Billot

Sleep· February 2024

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Machine learning of dissection photographs and surface scanning for quantitative 3D neuropathology.
Harshvardhan Gazula, Henry F J Tregidgo, Benjamin Billot, Yael Balbastre, Jonathan William-Ramirez

bioRxiv· January 2024

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AnyStar: Domain randomized universal star-convex 3D instance segmentation.
Neel Dey, S Mazdak Abulnaga, Benjamin Billot, Esra Abaci Turk, P Ellen Grant

IEEE Winter Conf Appl Comput Vis· January 2024

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Brain Growth Charts for Quantitative Analysis of Pediatric Clinical Brain MRI Scans with Limited Imaging Pathology.
Jenna M Schabdach, J Eric Schmitt, Susan Sotardi, Arastoo Vossough, Savvas Andronikou, Benjamin Billot

Radiology· October 2023

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SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining.
Benjamin Billot, Douglas N Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput

Med Image Anal· May 2023

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Domain-agnostic segmentation of thalamic nuclei from joint structural and diffusion MRI.
Henry F J Tregidgo, Sonja Soskic, Mark D Olchanyi, Juri Althonayan, Benjamin Billot

ArXiv· May 2023

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Quantitative Brain Morphometry of Portable Low-Field-Strength MRI Using Super-Resolution Machine Learning.
Juan Eugenio Iglesias, Riana Schleicher, Sonia Laguna, Benjamin Billot, Pamela Schaefer

Radiology· March 2023

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SynthSR: A public AI tool to turn heterogeneous clinical brain scans into high-resolution T1-weighted images for 3D morphometry.
Juan E Iglesias, Benjamin Billot, Yaël Balbastre, Colin Magdamo, Steven E Arnold

Sci Adv· February 2023

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Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasets.
Benjamin Billot, Colin Magdamo, You Cheng, Steven E Arnold, Sudeshna Das

Proc Natl Acad Sci U S A· February 2023

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In vivo hypothalamic regional volumetry across the frontotemporal dementia spectrum.
Noah L Shapiro, Emily G Todd, Benjamin Billot, David M Cash, Juan Eugenio Iglesias

Neuroimage Clin· August 2022

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SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images.
Malte Hoffmann, Benjamin Billot, Douglas N Greve, Juan Eugenio Iglesias, Bruce Fischl

IEEE Trans Med Imaging· March 2022

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A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images.
Douglas N Greve, Benjamin Billot, Devani Cordero, Andrew Hoopes, Malte Hoffmann

Neuroimage· December 2021

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Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast.
Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin

Neuroimage· August 2021

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JOINT SEGMENTATION OF MULTIPLE SCLEROSIS LESIONS AND BRAIN ANATOMY IN MRI SCANS OF ANY CONTRAST AND RESOLUTION WITH CNNs.
Benjamin Billot, Stefano Cerri, Koen Van Leemput, Adrian V Dalca, Juan Eugenio Iglesias

Proc IEEE Int Symp Biomed Imaging· April 2021

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