Publications by authors named "Benjamin Blum"

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Protocol for dual metabolomics and proteomics using nanoflow liquid chromatography-tandem mass spectrometry.
Weiwei Lin, Fatemeh Mousavi, Benjamin C Blum, Christian F Heckendorf, Matthew Lawton

STAR Protoc· June 2025

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Multiomic profiling of chronically activated CD4+ T cells identifies drivers of exhaustion and metabolic reprogramming.
Matthew L Lawton, Melissa M Inge, Benjamin C Blum, Erika L Smith-Mahoney, Dante Bolzan

PLoS Biol· December 2024

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PANAMA-enabled high-sensitivity dual nanoflow LC-MS metabolomics and proteomics analysis.
Weiwei Lin, Fatemeh Mousavi, Benjamin C Blum, Christian F Heckendorf, Matthew Lawton

Cell Rep Methods· July 2024

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DOT1L stimulates MYC/Mondo transcription factor activity by promoting its degradation cycle on chromatin.
Gian P Sepulveda, Ekaterina S Gushchanskaia, Alexandra Mora-Martin, Ruben Esse, Iana Nikorich, Benjamin C Blum

bioRxiv· February 2024

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Corrigendum: Integrated metabolomics and proteomics reveal biomarkers associated with hemodialysis in end-stage kidney disease.
Weiwei Lin, Fatemeh Mousavi, Benjamin C Blum, Christian F Heckendorf, Jarrod Moore

Front Pharmacol· February 2024

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Integrated metabolomics and proteomics reveal biomarkers associated with hemodialysis in end-stage kidney disease.
Weiwei Lin, Fatemeh Mousavi, Benjamin C Blum, Christian F Heckendorf, Jarrod Moore

Front Pharmacol· November 2023

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Integration of Metabolomic and Proteomic Data to Uncover Actionable Metabolic Pathways.
Christian Heckendorf, Benjamin C Blum, Weiwei Lin, Matthew L Lawton, Andrew Emili

Methods Mol Biol· May 2023

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Proteomic and phosphoproteomic profiling in heart failure with preserved ejection fraction (HFpEF).
María Valero-Muñoz, Eng Leng Saw, Ryan M Hekman, Benjamin C Blum, Zaynab Hourani

Front Cardiovasc Med· August 2022

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Pilot Study Showing Feasibility of Phosphoproteomic Profiling of Pathway-Level Molecular Alterations in Barrett's Esophagus.
Jarrod Moore, Ryan Hekman, Benjamin C Blum, Matthew Lawton, Sylvain Lehoux

Genes (Basel)· July 2022

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Humanized mice reveal a macrophage-enriched gene signature defining human lung tissue protection during SARS-CoV-2 infection.
Devin J Kenney, Aoife K O'Connell, Jacquelyn Turcinovic, Paige Montanaro, Ryan M Hekman, Benjamin Blum

Cell Rep· April 2022

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Multiomic Metabolic Enrichment Network Analysis Reveals Metabolite-Protein Physical Interaction Subnetworks Altered in Cancer.
Benjamin C Blum, Weiwei Lin, Matthew L Lawton, Qian Liu, Julian Kwan

Mol Cell Proteomics· January 2022

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SARS-CoV-2 Disrupts Proximal Elements in the JAK-STAT Pathway.
Da-Yuan Chen, Nazimuddin Khan, Brianna J Close, Raghuveera K Goel, Benjamin Blum

J Virol· September 2021

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: robust, reproducible and flexible automated multiomics exploratory analysis and reporting.
Benjamin C Blum, Andrew Emili

Bioinform Adv· September 2021

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Patient-specific iPSCs carrying an SFTPC mutation reveal the intrinsic alveolar epithelial dysfunction at the inception of interstitial lung disease.
Konstantinos-Dionysios Alysandratos, Scott J Russo, Anton Petcherski, Evan P Taddeo, Rebeca Acín-Pérez, Benjamin C Blum

Cell Rep· August 2021

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Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2.
Ryan M Hekman, Adam J Hume, Raghuveera Kumar Goel, Kristine M Abo, Jessie Huang, Benjamin C Blum

Mol Cell· January 2021

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Intracellular Density of Is Mediated by Host Autophagy and the Bacterial Cytoplasmic Incompatibility Gene in a Cell Type-Dependent Manner in Drosophila melanogaster.
Mark Deehan, Weiwei Lin, Benjamin Blum, Andrew Emili, Horacio Frydman

mBio· January 2021

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Loss of G-Protein Pathway Suppressor 2 Promotes Tumor Growth Through Activation of AKT Signaling.
Stefanie Chan, Emma Smith, Yuan Gao, Julian Kwan, Benjamin C Blum

Front Cell Dev Biol· January 2021

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Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2.
Ryan M Hekman, Adam J Hume, Raghuveera Kumar Goel, Kristine M Abo, Jessie Huang, Benjamin C Blum

Mol Cell· December 2020

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Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells.
Antonella F M Dost, Aaron L Moye, Marall Vedaie, Linh M Tran, Eileen Fung, Benjamin C Blum

Cell Stem Cell· October 2020

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SARS-CoV-2 desensitizes host cells to interferon through inhibition of the JAK-STAT pathway.
Da-Yuan Chen, Nazimuddin Khan, Brianna J Close, Raghuveera K Goel, Benjamin Blum

bioRxiv· October 2020

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Triphenyl phosphate is a selective PPARγ modulator that does not induce brite adipogenesis in vitro and in vivo.
Stephanie Kim, Nabil Rabhi, Benjamin C Blum, Ryan Hekman, Kieran Wynne

Arch Toxicol· September 2020

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BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain.
Reza Pourhaghighi, Peter E A Ash, Sadhna Phanse, Florian Goebels, Lucas Z M Hu, Benjamin C Blum

Cell Syst· August 2020

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BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain.
Reza Pourhaghighi, Peter E A Ash, Sadhna Phanse, Florian Goebels, Lucas Z M Hu, Benjamin C Blum

Cell Syst· April 2020

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A Mutation in That Decreases Methamphetamine-Induced Reinforcement, Reward, and Dopamine Release and Increases Synaptosomal hnRNP H and Mitochondrial Proteins.
Qiu T Ruan, Neema Yazdani, Benjamin C Blum, Jacob A Beierle, Weiwei Lin

J Neurosci· January 2020

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Single-platform 'multi-omic' profiling: unified mass spectrometry and computational workflows for integrative proteomics-metabolomics analysis.
Benjamin C Blum, Fatemeh Mousavi, Andrew Emili

Mol Omics· October 2018

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