Publications by authors named "Benjamin Cocks"

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De Novo Long-Read Whole-Genome Assemblies and the Comparative Pan-Genome Analysis of Ascochyta Blight Pathogens Affecting Field Pea.
Yvonne O Ogaji, Robert C Lee, Tim I Sawbridge, Benjamin G Cocks, Hans D Daetwyler

J Fungi (Basel)· August 2022

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Improving Genomic Selection for Heat Tolerance in Dairy Cattle: Current Opportunities and Future Directions.
Evans K Cheruiyot, Mekonnen Haile-Mariam, Benjamin G Cocks, Jennie E Pryce

Front Genet· June 2022

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Dietary wheat and reduced methane yield are linked to rumen microbiome changes in dairy cows.
Keith W Savin, Peter J Moate, S R O Williams, Carolyn Bath, Joanne Hemsworth, Benjamin G Cocks

PLoS One· May 2022

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Recovery of mitogenomes from whole genome sequences to infer maternal diversity in 1883 modern taurine and indicine cattle.
Jigme Dorji, Christy J Vander Jagt, Amanda J Chamberlain, Benjamin G Cocks, Iona M MacLeod

Sci Rep· April 2022

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Correction to: Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle.
Jigme Dorji, Christy J Vander Jagt, Josie B Garner, Leah C Marett, Brett A Mason, Benjamin G Cocks

BMC Genomics· April 2022

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Functionally prioritised whole-genome sequence variants improve the accuracy of genomic prediction for heat tolerance.
Evans K Cheruiyot, Mekonnen Haile-Mariam, Benjamin G Cocks, Iona M MacLeod, Raphael Mrode

Genet Sel Evol· February 2022

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New loci and neuronal pathways for resilience to heat stress in cattle.
Evans K Cheruiyot, Mekonnen Haile-Mariam, Benjamin G Cocks, Iona M MacLeod, Ruidong Xiang

Sci Rep· August 2021

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Mitochondrial protein gene expression and the oxidative phosphorylation pathway associated with feed efficiency and energy balance in dairy cattle.
Jigme Dorji, Iona M MacLeod, Amanda J Chamberlain, Christy J Vander Jagt, Phuong N Ho, Benjamin G Cocks

J Dairy Sci· January 2021

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Fungus-originated genes in the genomes of cereal and pasture grasses acquired through ancient lateral transfer.
Hiroshi Shinozuka, Maiko Shinozuka, Ellen M de Vries, Timothy I Sawbridge, German C Spangenberg, Benjamin G Cocks

Sci Rep· November 2020

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Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle.
Jigme Dorji, Christy J Vander Jagt, Josie B Garner, Leah C Marett, Brett A Mason, Benjamin G Cocks

BMC Genomics· October 2020

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Faecalibacterium diversity in dairy cow milk.
Keith W Savin, Jody Zawadzki, Martin J Auldist, Jianghui Wang, Doris Ram, Benjamin G Cocks

PLoS One· April 2020

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Fine-mapping sequence mutations with a major effect on oligosaccharide content in bovine milk.
Zhiqian Liu, Tingting Wang, Jennie E Pryce, Iona M MacLeod, Ben J Hayes, Benjamin G Cocks

Sci Rep· February 2019

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Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits.
Min Wang, Timothy P Hancock, Amanda J Chamberlain, Christy J Vander Jagt, Jennie E Pryce, Benjamin G Cocks

BMC Genomics· May 2018

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Seasonal variation of polar lipid content in bovine milk.
Zhiqian Liu, Amy Logan, Benjamin G Cocks, Simone Rochfort

Food Chem· December 2017

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Horizontal transfer of a ß-1,6-glucanase gene from an ancestral species of fungal endophyte to a cool-season grass host.
Hiroshi Shinozuka, Inoka K Hettiarachchige, Maiko Shinozuka, Noel O I Cogan, German C Spangenberg, Benjamin G Cocks

Sci Rep· August 2017

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Putative enhancer sites in the bovine genome are enriched with variants affecting complex traits.
Min Wang, Timothy P Hancock, Iona M MacLeod, Jennie E Pryce, Benjamin G Cocks

Genet Sel Evol· July 2017

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Seasonal Variation of Triacylglycerol Profile of Bovine Milk.
Zhiqian Liu, Jianghui Wang, Benjamin G Cocks, Simone Rochfort

Metabolites· June 2017

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Bovine Milk Oligosaccharide Contents Show Remarkable Seasonal Variation and Intercow Variation.
Zhiqian Liu, Martin Auldist, Marlie Wright, Benjamin Cocks, Simone Rochfort

J Agric Food Chem· February 2017

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Optimization of a single phase method for lipid extraction from milk.
Zhiqian Liu, Simone Rochfort, Benjamin G Cocks

J Chromatogr A· August 2016

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Comparison of Molecular Species Distribution of DHA-Containing Triacylglycerols in Milk and Different Infant Formulas by Liquid Chromatography-Mass Spectrometry.
Zhiqian Liu, Benjamin G Cocks, Simone Rochfort

J Agric Food Chem· March 2016

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Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle.
Lesley-Ann Raven, Benjamin G Cocks, Kathryn E Kemper, Amanda J Chamberlain, Christy J Vander Jagt

Mamm Genome· February 2016

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Accounting for dominance to improve genomic evaluations of dairy cows for fertility and milk production traits.
Hassan Aliloo, Jennie E Pryce, Oscar González-Recio, Benjamin G Cocks, Ben J Hayes

Genet Sel Evol· February 2016

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Milk Bottom-Up Proteomics: Method Optimization.
Delphine Vincent, Vilnis Ezernieks, Aaron Elkins, Nga Nguyen, Peter J Moate, Benjamin G Cocks

Front Genet· January 2016

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Identification and quantification of triacylglycerols containing n-3 long-chain polyunsaturated fatty acids in bovine milk.
Zhiqian Liu, Peter Moate, Vilnis Ezerniks, Benjamin G Cocks, Simone Rochfort

J Dairy Sci· December 2015

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Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cows.
Hassan Aliloo, Jennie E Pryce, Oscar González-Recio, Benjamin G Cocks, Ben J Hayes

BMC Genet· July 2015

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