Publications by authors named "Benjamin F Matthews"

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Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean.
Shuxian Li, Omar Darwish, Nadim W Alkharouf, Bryan Musungu, Benjamin F Matthews

BMC Genomics· September 2017

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Manipulation of two α-endo-β-1,4-glucanase genes, AtCel6 and GmCel7, reduces susceptibility to Heterodera glycines in soybean roots.
Mi-Ok Woo, Hunter Beard, Margaret H MacDonald, Eric P Brewer, Reham M Youssef, Benjamin F Matthews

Mol Plant Pathol· December 2014

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Regulatory interplay between soybean root and soybean cyst nematode during a resistant and susceptible reaction.
Parsa Hosseini, Benjamin F Matthews

BMC Plant Biol· November 2014

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SoyProLow: A protein database enriched in low abundant soybean proteins.
Mona Tavakolan, Nadim W Alkharouf, Benjamin F Matthews, Savithiry S Natarajan

Bioinformation· October 2014

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SCNProDB: A database for the identification of soybean cyst nematode proteins.
Savithiry Natarajan, Mona Tavakolan, Nadim W Alkharouf, Benjamin F Matthews

Bioinformation· August 2014

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Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks.
Courtney A Hollender, Chunying Kang, Omar Darwish, Aviva Geretz, Benjamin F Matthews

Plant Physiol· July 2014

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Arabidopsis genes, AtNPR1, AtTGA2 and AtPR-5, confer partial resistance to soybean cyst nematode (Heterodera glycines) when overexpressed in transgenic soybean roots.
Benjamin F Matthews, Hunter Beard, Eric Brewer, Sara Kabir, Margaret H MacDonald

BMC Plant Biol· April 2014

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Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing.
Arianne Tremblay, Parsa Hosseini, Shuxian Li, Nadim W Alkharouf, Benjamin F Matthews

BMC Genomics· September 2013

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Post-transcriptional gene silencing of the gene encoding aldolase from soybean cyst nematode by transformed soybean roots.
Reham M Youssef, Kyung-Hwan Kim, Sanaa A Haroon, Benjamin F Matthews

Exp Parasitol· June 2013

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The pJan25 vector series: an enhancement of the Gateway-compatible vector pGWB533 for broader promoter testing applications.
Ahmed Mansour Alzohairy, Margaret H MacDonald, Benjamin F Matthews

Plasmid· May 2013

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Engineered resistance and hypersusceptibility through functional metabolic studies of 100 genes in soybean to its major pathogen, the soybean cyst nematode.
Benjamin F Matthews, Hunter Beard, Margaret H MacDonald, Sara Kabir, Reham M Youssef

Planta· May 2013

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Using an ensemble of statistical metrics to quantify large sets of plant transcription factor binding sites.
Parsa Hosseini, Ivan Ovcharenko, Benjamin F Matthews

Plant Methods· April 2013

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Ectopic expression of AtPAD4 broadens resistance of soybean to soybean cyst and root-knot nematodes.
Reham M Youssef, Margaret H MacDonald, Eric P Brewer, Gary R Bauchan, Kyung-Hwan Kim, Benjamin F Matthews

BMC Plant Biol· April 2013

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RKN Lethal DB: A database for the identification of Root Knot Nematode (Meloidogyne spp.) candidate lethal genes.
Ahmed Ismail, Benjamin F Matthews, Nadim W Alkharouf

Bioinformation· November 2012

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Microarray Detection Call Methodology as a Means to Identify and Compare Transcripts Expressed within Syncytial Cells from Soybean (Glycine max) Roots Undergoing Resistant and Susceptible Reactions to the Soybean Cyst Nematode (Heterodera glycines).
Vincent P Klink, Christopher C Overall, Nadim W Alkharouf, Margaret H Macdonald, Benjamin F Matthews

J Biomed Biotechnol· September 2012

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The expression of a naturally occurring, truncated allele of an α-SNAP gene suppresses plant parasitic nematode infection.
Prachi D Matsye, Gary W Lawrence, Reham M Youssef, Kyung-Hwan Kim, Katheryn S Lawrence, Benjamin F Matthews

Plant Mol Biol· September 2012

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MAPT and PAICE: Tools for time series and single time point transcriptionist visualization and knowledge discovery.
Parsa Hosseini, Arianne Tremblay, Benjamin F Matthews, Nadim W Alkharouf

Bioinformation· August 2012

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Two-dimensional proteome reference maps for the soybean cyst nematode Heterodera glycines.
Xi Chen, Margaret H MacDonald, Farooq Khan, Wesley M Garrett, Benjamin F Matthews

Proteomics· December 2011

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Mapping cell fate decisions that occur during soybean defense responses.
Prachi D Matsye, Ranjit Kumar, Parsa Hosseini, Christina M Jones, Arianne Tremblay, Benjamin F Matthews

Plant Mol Biol· November 2011

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Analysis of gene expression in soybean (Glycine max) roots in response to the root knot nematode Meloidogyne incognita using microarrays and KEGG pathways.
Heba M M Ibrahim, Parsa Hosseini, Nadim W Alkharouf, Ebtissam H A Hussein, Abd El Kader Y Gamal El-Din, Benjamin F Matthews

BMC Genomics· May 2011

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Overexpression of the mitogen-activated protein kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.).
Seong-Kon Lee, Beom-Gi Kim, Taek-Ryoun Kwon, Mi-Jeong Jeong, Sang-Ryeol Park, Benjamin F Matthews

J Biosci· March 2011

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Post-transcriptional gene silencing of root-knot nematode in transformed soybean roots.
Heba M M Ibrahim, Nadim W Alkharouf, Susan L F Meyer, Mohammed A M Aly, Abd El Kader Y Gamal El-Din, Benjamin F Matthews

Exp Parasitol· January 2011

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Differences in gene expression amplitude overlie a conserved transcriptomic program occurring between the rapid and potent localized resistant reaction at the syncytium of the Glycine max genotype Peking (PI 548402) as compared to the prolonged and potent resistant reaction of PI 88788.
Vincent P Klink, Parsa Hosseini, Prachi D Matsye, Nadim W Alkharouf, Benjamin F Matthews

Plant Mol Biol· January 2011

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Syncytium gene expression in Glycine max([PI 88788]) roots undergoing a resistant reaction to the parasitic nematode Heterodera glycines.
Vincent P Klink, Parsa Hosseini, Prachi D Matsye, Nadim W Alkharouf, Benjamin F Matthews

Plant Physiol Biochem· September 2010

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An efficient annotation and gene-expression derivation tool for Illumina Solexa datasets.
Parsa Hosseini, Arianne Tremblay, Benjamin F Matthews, Nadim W Alkharouf

BMC Res Notes· July 2010

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