Publications by authors named "Benjamin Good"

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Modeling the Synergetic Dynamics of B cells and T cells in Germinal Center Reactions.
Andrew G T Pyo, Julia Merkenschlager, Quan Pham, Benjamin H Good, Michel C Nussenzweig

bioRxiv· December 2025

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Community coalescence reveals strong selection and coexistence within species in complex microbial communities.
Sophie Jean Walton, Qing Xu, Richa Sharma, Hannah R Gellert, Chih-Fu Yeh, Benjamin H Good

bioRxiv· November 2025

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Dynamics of local B cell migration during affinity maturation in the human tonsil.
John McEnany, Benjamin H Good, Ivana Cvijović

bioRxiv· November 2025

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Dynamics of dN/dS within recombining bacterial populations.
Zhiru Liu, Benjamin H Good

bioRxiv· November 2025

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Ecological diversification in rapidly evolving populations.
Daniel P G H Wong, Benjamin H Good

bioRxiv· September 2025

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Unraveling the tempo and mode of horizontal gene transfer in bacteria.
Benjamin H Good, Ami S Bhatt, Michael J McDonald

Trends Microbiol· August 2025

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Low-dimensional genotype-fitness mapping across divergent environments suggests a limiting functions model of fitness.
Olivia M Ghosh, Grant Kinsler, Benjamin H Good, Dmitri A Petrov

bioRxiv· May 2025

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Abundance measurements reveal the balance between lysis and lysogeny in the human gut microbiome.
Jamie Alcira Lopez, Saria McKeithen-Mead, Handuo Shi, Taylor H Nguyen, Kerwyn Casey Huang, Benjamin H Good

Curr Biol· May 2025

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Gut microbe-derived lactic acid optimizes host energy metabolism during starvation.
Jason William Millington, Jamie Alcira Lopez, Amin M Sajjadian, Robert J Scheffler, Brian C DeFelice, Benjamin H Good

bioRxiv· May 2025

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Genome-scale resources in the infant gut symbiont Bifidobacterium breve reveal genetic determinants of colonization and host-microbe interactions.
Anthony L Shiver, Jiawei Sun, Rebecca Culver, Arvie Violette, Char Wynter, Benjamin H Good

Cell· April 2025

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Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communities.
Doran A Goldman, Katherine S Xue, Autumn B Parrott, Jamie A Lopez, Jean C C Vila, Benjamin H Good

Proc Natl Acad Sci U S A· March 2025

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Abundance measurements reveal the balance between lysis and lysogeny in the human gut microbiome.
Jamie A Lopez, Saria McKeithen-Mead, Handuo Shi, Taylor H Nguyen, Kerwyn Casey Huang, Benjamin H Good

bioRxiv· December 2024

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Linkage equilibrium between rare mutations.
Anastasia S Lyulina, Zhiru Liu, Benjamin H Good

Genetics· November 2024

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Evolution of evolvability in rapidly adapting populations.
James T Ferrare, Benjamin H Good

Nat Ecol Evol· November 2024

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Predicting the first steps of evolution in randomly assembled communities.
John McEnany, Benjamin H Good

Nat Commun· October 2024

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Direct and indirect selection in a proofreading polymerase.
Kabir Husain, Vedant Sachdeva, Riccardo Ravasio, Michele Peruzzo, Wanqiang Liu, Benjamin H Good

bioRxiv· October 2024

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Predicting the First Steps of Evolution in Randomly Assembled Communities.
John McEnany, Benjamin H Good

bioRxiv· June 2024

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Linkage equilibrium between rare mutations.
Anastasia S Lyulina, Zhiru Liu, Benjamin H Good

bioRxiv· April 2024

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Dynamics of bacterial recombination in the human gut microbiome.
Zhiru Liu, Benjamin H Good

PLoS Biol· February 2024

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Quantifying the adaptive landscape of commensal gut bacteria using high-resolution lineage tracking.
Daniel P G H Wong, Benjamin H Good

Nat Commun· February 2024

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Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communities.
Doran A Goldman, Katherine S Xue, Autumn B Parrott, Rashi R Jeeda, Lauryn R Franzese, Benjamin H Good

bioRxiv· December 2023

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Eco-evolutionary feedbacks in the human gut microbiome.
Benjamin H Good, Layton B Rosenfeld

Nat Commun· November 2023

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Prolonged delays in human microbiota transmission after a controlled antibiotic perturbation.
Katherine S Xue, Sophie Jean Walton, Doran A Goldman, Maike L Morrison, Adrian J Verster, Benjamin H Good

bioRxiv· October 2023

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A mutant fitness compendium in Bifidobacteria reveals molecular determinants of colonization and host-microbe interactions.
Anthony L Shiver, Jiawei Sun, Rebecca Culver, Arvie Violette, Charles Wynter, Benjamin Good

bioRxiv· August 2023

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Quantifying the local adaptive landscape of a nascent bacterial community.
Joao A Ascensao, Kelly M Wetmore, Benjamin H Good, Adam P Arkin, Oskar Hallatschek

Nat Commun· January 2023

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