Publications by authors named "Benjamin J Binder"

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Accidental and Regulated Cell Death in Yeast Colony Biofilms.
Daniel J Netherwood, Alexander K Y Tam, Campbell W Gourlay, Tea Knežević, Jennifer M Gardner, Benjamin J Binder

Bull Math Biol· July 2025

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Analyzing diffusion-limited processes in a cylinder using pair-correlation functions.
Benjamin James Binder

Phys Rev E· May 2025

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Competing mechanisms for the buckling of an epithelial monolayer identified using multicellular simulation.
Phillip J Brown, J Edward F Green, Benjamin J Binder, James M Osborne

Math Biosci· February 2025

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An off-lattice discrete model to characterise filamentous yeast colony morphology.
Kai Li, J Edward F Green, Hayden Tronnolone, Alexander K Y Tam, Andrew J Black, Benjamin J Binder

PLoS Comput Biol· November 2024

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Publisher Correction: A rigid body framework for multicellular modeling.
Phillip J Brown, J Edward F Green, Benjamin J Binder, James M Osborne

Nat Comput Sci· January 2022

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Thin-film lubrication model for biofilm expansion under strong adhesion.
Alexander K Y Tam, Brendan Harding, J Edward F Green, Sanjeeva Balasuriya, Benjamin J Binder

Phys Rev E· January 2022

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A rigid body framework for multicellular modeling.
Phillip J Brown, J Edward F Green, Benjamin J Binder, James M Osborne

Nat Comput Sci· November 2021

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Modelling uniaxial non-uniform yeast colony growth: Comparing an agent-based model and continuum approximations.
Anthony J Gallo, Hayden Tronnolone, J Edward F Green, Benjamin J Binder

J Theor Biol· August 2021

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Discrete Manhattan and Chebyshev pair correlation functions in k dimensions.
Alexander Lai De Oliveira, Benjamin J Binder

Phys Rev E· July 2020

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A thin-film extensional flow model for biofilm expansion by sliding motility.
Alexander Tam, J Edward F Green, Sanjeeva Balasuriya, Ee Lin Tek, Jennifer M Gardner, Benjamin J Binder

Proc Math Phys Eng Sci· September 2019

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Modeling Uniaxial Nonuniform Cell Proliferation.
Alexander Lai De Oliveira, Benjamin J Binder

Bull Math Biol· July 2019

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TAMMiCol: Tool for analysis of the morphology of microbial colonies.
Hayden Tronnolone, Jennifer M Gardner, Joanna F Sundstrom, Vladimir Jiranek, Stephen G Oliver, Benjamin J Binder

PLoS Comput Biol· December 2018

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Characterizing the shape patterns of dimorphic yeast pseudohyphae.
Amelia Gontar, Murk J Bottema, Benjamin J Binder, Hayden Tronnolone

R Soc Open Sci· October 2018

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Nutrient-limited growth with non-linear cell diffusion as a mechanism for floral pattern formation in yeast biofilms.
Alexander Tam, J Edward F Green, Sanjeeva Balasuriya, Ee Lin Tek, Jennifer M Gardner, Benjamin J Binder

J Theor Biol· July 2018

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Diffusion-Limited Growth of Microbial Colonies.
Hayden Tronnolone, Alexander Tam, Zoltán Szenczi, J E F Green, Sanjeeva Balasuriya, Benjamin J Binder

Sci Rep· April 2018

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Quantifying the dominant growth mechanisms of dimorphic yeast using a lattice-based model.
Hayden Tronnolone, Jennifer M Gardner, Joanna F Sundstrom, Vladimir Jiranek, Stephen G Oliver, Benjamin J Binder

J R Soc Interface· September 2017

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Differential Clonal Expansion in an Invading Cell Population: Clonal Advantage or Dumb Luck?
Donald F Newgreen, Dongcheng Zhang, Bevan L Cheeseman, Benjamin J Binder, Kerry A Landman

Cells Tissues Organs· May 2017

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Quantifying the effect of experimental design choices for in vitro scratch assays.
Stuart T Johnston, Joshua V Ross, Benjamin J Binder, D L Sean McElwain, Parvathi Haridas

J Theor Biol· July 2016

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Incomplete penetrance: The role of stochasticity in developmental cell colonization.
Benjamin J Binder, Kerry A Landman, Donald F Newgreen, Joshua V Ross

J Theor Biol· September 2015

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Quantifying two-dimensional filamentous and invasive growth spatial patterns in yeast colonies.
Benjamin J Binder, Joanna F Sundstrom, Jennifer M Gardner, Vladimir Jiranek, Stephen G Oliver

PLoS Comput Biol· February 2015

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Spectral analysis of pair-correlation bandwidth: application to cell biology images.
Benjamin J Binder, Matthew J Simpson

R Soc Open Sci· February 2015

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Interpreting scratch assays using pair density dynamics and approximate Bayesian computation.
Stuart T Johnston, Matthew J Simpson, D L Sean McElwain, Benjamin J Binder, Joshua V Ross

Open Biol· September 2014

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Assessing the role of spatial correlations during collective cell spreading.
Katrina K Treloar, Matthew J Simpson, Benjamin J Binder, D L Sean McElwain, Ruth E Baker

Sci Rep· July 2014

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Approximating spatially exclusive invasion processes.
Joshua V Ross, Benjamin J Binder

Phys Rev E Stat Nonlin Soft Matter Phys· May 2014

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Cell lineage tracing in the developing enteric nervous system: superstars revealed by experiment and simulation.
Bevan L Cheeseman, Dongcheng Zhang, Benjamin J Binder, Donald F Newgreen, Kerry A Landman

J R Soc Interface· April 2014

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