Publications by authors named "Benjamin Linard"

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Phylogenetic diversity only weakly mitigates climate-change-driven biodiversity loss in insect communities.
Zongxu Li, Benjamin Linard, Alfried P Vogler, Douglas W Yu, Zhengyang Wang

Mol Ecol· December 2023

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EPIK: precise and scalable evolutionary placement with informative k-mers.
Nikolai Romashchenko, Benjamin Linard, Fabio Pardi, Eric Rivals

Bioinformatics· December 2023

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Computing Phylo- k-Mers.
Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi

IEEE/ACM Trans Comput Biol Bioinform· October 2023

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Ten Years of Collaborative Progress in the Quest for Orthologs.
Benjamin Linard, Ingo Ebersberger, Shawn E McGlynn, Natasha Glover, Tomohiro Mochizuki

Mol Biol Evol· July 2021

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Rapid screening and detection of inter-type viral recombinants using phylo-k-mers.
Guillaume E Scholz, Benjamin Linard, Nikolai Romashchenko, Eric Rivals, Fabio Pardi

Bioinformatics· April 2021

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PEWO: a collection of workflows to benchmark phylogenetic placement.
Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals

Bioinformatics· January 2021

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Mitochondrial Metagenomics Reveals the Ancient Origin and Phylodiversity of Soil Mites and Provides a Phylogeny of the Acari.
Paula Arribas, Carmelo Andújar, María Lourdes Moraza, Benjamin Linard, Brent C Emerson

Mol Biol Evol· March 2020

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Rapid alignment-free phylogenetic identification of metagenomic sequences.
Benjamin Linard, Krister Swenson, Fabio Pardi

Bioinformatics· September 2019

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New mitochondrial genomes of 39 soil dwelling Coleoptera from metagenome sequencing.
Carmelo Andújar, Paula Arribas, Michal Motyka, Mathew Bocek, Ladislav Bocak, Benjamin Linard

Mitochondrial DNA B Resour· July 2019

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OrthoInspector 3.0: open portal for comparative genomics.
Yannis Nevers, Arnaud Kress, Audrey Defosset, Raymond Ripp, Benjamin Linard

Nucleic Acids Res· January 2019

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The contribution of mitochondrial metagenomics to large-scale data mining and phylogenetic analysis of Coleoptera.
Benjamin Linard, Alex Crampton-Platt, Jerome Moriniere, Martijn J T N Timmermans, Carmelo Andújar

Mol Phylogenet Evol· November 2018

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Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents.
Débora P Paula, Benjamin Linard, Alex Crampton-Platt, Amrita Srivathsan, Martijn J T N Timmermans

PLoS One· August 2017

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The mitochondrial genome of Iberobaenia (Coleoptera: Iberobaeniidae): first rearrangement of protein-coding genes in the beetles.
Carmelo Andujar, Paula Arribas, Benjamin Linard, Robin Kundrata, Ladislav Bocak

Mitochondrial DNA A DNA Mapp Seq Anal· March 2017

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Standardized benchmarking in the quest for orthologs.
Adrian M Altenhoff, Brigitte Boeckmann, Salvador Capella-Gutierrez, Daniel A Dalquen, Todd DeLuca, Benjamin Linard

Nat Methods· May 2016

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Detection and decay rates of prey and prey symbionts in the gut of a predator through metagenomics.
Débora P Paula, Benjamin Linard, David A Andow, Edison R Sujii, Carmen S S Pires

Mol Ecol Resour· July 2015

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Metagenome Skimming of Insect Specimen Pools: Potential for Comparative Genomics.
Benjamin Linard, Alex Crampton-Platt, Conrad P D T Gillett, Martijn J T N Timmermans, Alfried P Vogler

Genome Biol Evol· May 2015

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OrthoInspector 2.0: Software and database updates.
Benjamin Linard, Alexis Allot, Raphaël Schneider, Can Morel, Raymond Ripp

Bioinformatics· February 2015

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Functional insights into the core-TFIIH from a comparative survey.
Florence Bedez, Benjamin Linard, Xavier Brochet, Raymond Ripp, Julie D Thompson

Genomics· March 2013

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EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data.
Benjamin Linard, Ngoc Hoan Nguyen, Francisco Prosdocimi, Olivier Poch, Julie D Thompson

Evol Bioinform Online· August 2012

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KD4v: Comprehensible Knowledge Discovery System for Missense Variant.
Tien-Dao Luu, Alin Rusu, Vincent Walter, Benjamin Linard, Laetitia Poidevin

Nucleic Acids Res· July 2012

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Controversies in modern evolutionary biology: the imperative for error detection and quality control.
Francisco Prosdocimi, Benjamin Linard, Pierre Pontarotti, Olivier Poch, Julie D Thompson

BMC Genomics· January 2012

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A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives.
Julie D Thompson, Benjamin Linard, Odile Lecompte, Olivier Poch

PLoS One· March 2011

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OrthoInspector: comprehensive orthology analysis and visual exploration.
Benjamin Linard, Julie D Thompson, Olivier Poch, Odile Lecompte

BMC Bioinformatics· January 2011

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Ketogenic diet exhibits neuroprotective effects in hippocampus but fails to prevent epileptogenesis in the lithium-pilocarpine model of mesial temporal lobe epilepsy in adult rats.
Benjamin Linard, Arielle Ferrandon, Estelle Koning, Astrid Nehlig, Emmanuel Raffo

Epilepsia· September 2010

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