Publications by authors named "Benjamin R Jack"

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Pinetree: a step-wise gene expression simulator with codon-specific translation rates.
Benjamin R Jack, Claus O Wilke

Bioinformatics· October 2019

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Transcript degradation and codon usage regulate gene expression in a lytic phage.
Benjamin R Jack, Daniel R Boutz, Matthew L Paff, Bartram L Smith, Claus O Wilke

Virus Evol· July 2019

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Combinatorial Approaches to Viral Attenuation.
Matthew L Paff, Benjamin R Jack, Bartram L Smith, James J Bull, Claus O Wilke

mSystems· July 2018

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Phage-Bacterial Dynamics with Spatial Structure: Self Organization around Phage Sinks Can Promote Increased Cell Densities.
James J Bull, Kelly A Christensen, Carly Scott, Benjamin R Jack, Cameron J Crandall

Antibiotics (Basel)· January 2018

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Measuring evolutionary rates of proteins in a structural context.
Dariya K Sydykova, Benjamin R Jack, Stephanie J Spielman, Claus O Wilke

F1000Res· October 2017

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Reduced Protein Expression in a Virus Attenuated by Codon Deoptimization.
Benjamin R Jack, Daniel R Boutz, Matthew L Paff, Bartram L Smith, James J Bull

G3 (Bethesda)· September 2017

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Intermediate divergence levels maximize the strength of structure-sequence correlations in enzymes and viral proteins.
Eleisha L Jackson, Amir Shahmoradi, Stephanie J Spielman, Benjamin R Jack, Claus O Wilke

Protein Sci· July 2016

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Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes.
Benjamin R Jack, Austin G Meyer, Julian Echave, Claus O Wilke

PLoS Biol· May 2016

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Predicting the Genetic Stability of Engineered DNA Sequences with the EFM Calculator.
Benjamin R Jack, Sean P Leonard, Dennis M Mishler, Brian A Renda, Dacia Leon

ACS Synth Biol· August 2015

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