Publications by authors named "Benny Chain"

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Subclonal immune evasion in non-small cell lung cancer.
Krijn K Dijkstra, Roberto Vendramin, Despoina Karagianni, Maartje Witsen, Felipe Gálvez-Cancino, Benny Chain

Cancer Cell· October 2025

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Heterogeneity of thymic output in the elderly and its association with sex and smoking.
Balraj Sandhar, Vishal Vyas, Daniel Harding, Roberta Ragazzini, Paola Bonfanti, Benny M Chain

JCI Insight· August 2025

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Evolutionary and immune microenvironment dynamics during neoadjuvant treatment of esophageal adenocarcinoma.
Melissa Barroux, Jacob Househam, Eszter Lakatos, Tahel Ronel, Ann-Marie Baker, Benny Chain

Nat Cancer· May 2025

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A Robust Quantitative Multiplex PCR for T-cell Receptor Repertoire Sequencing from Formalin-Fixed Paraffin-Embedded Samples.
Gayathri Nageswaran, Suzanne Byrne, Pablo Nenclares, Matthew Cowley, Alex Poignant, Benny Chain

Methods Mol Biol· May 2025

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Clonal driver neoantigen loss under EGFR TKI and immune selection pressures.
Maise Al Bakir, James L Reading, Samuel Gamble, Rachel Rosenthal, Imran Uddin, Benny Chain

Nature· March 2025

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Contrastive learning of T cell receptor representations.
Yuta Nagano, Andrew G T Pyo, Martina Milighetti, James Henderson, John Shawe-Taylor, Benny Chain

Cell Syst· January 2025

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Distinctive T-cell receptor repertoire in paediatric inflammatory multisystem syndrome temporally associated with coronavirus disease 2019/multisystem inflammatory syndrome in children patients: possible thymus involvement.
Diana C Yanez, Jasmine Rowell, Maximillian Woodall, Stuart Adams, Lauran O'Neill, Benny Chain

Clin Exp Immunol· January 2025

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Distinct T-cell receptor (TCR) gene segment usage and MHC-restriction between foetal and adult thymus.
Jasmine Rowell, Ching-In Lau, Susan Ross, Diana C Yanez, Oscar A Peña, Benny Chain

Elife· December 2024

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Mucosal and systemic immune correlates of viral control after SARS-CoV-2 infection challenge in seronegative adults.
Helen R Wagstaffe, Ryan S Thwaites, Arnold Reynaldi, Jasmin K Sidhu, Richard McKendry, Benny M Chain

Sci Immunol· September 2024

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Tissue-resident memory T cells in epicardial adipose tissue comprise transcriptionally distinct subsets that are modulated in atrial fibrillation.
Vishal Vyas, Balraj Sandhar, Jack M Keane, Elizabeth G Wood, Hazel Blythe, Benny Chain

Nat Cardiovasc Res· September 2024

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Author Correction: Human SARS-CoV-2 challenge uncovers local and systemic response dynamics.
Rik G H Lindeboom, Kaylee B Worlock, Lisa M Dratva, Masahiro Yoshida, David Scobie, Benny Chain

Nature· August 2024

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Human SARS-CoV-2 challenge uncovers local and systemic response dynamics.
Rik G H Lindeboom, Kaylee B Worlock, Lisa M Dratva, Masahiro Yoshida, David Scobie, Benny Chain

Nature· July 2024

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FUME-TCRseq Enables Sensitive and Accurate Sequencing of the T-cell Receptor from Limited Input of Degraded RNA.
Ann-Marie Baker, Gayathri Nageswaran, Pablo Nenclares, Tahel Ronel, Kane Smith, Benny Chain

Cancer Res· May 2024

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High affinity mAb infusion can enhance maximum affinity maturation during HIV Env immunization.
Peter Thomas, Chloe Rees-Spear, Sarah Griffith, Luke Muir, Emma Touizer, Benny Chain

iScience· April 2024

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T-cell receptor determinants of response to chemoradiation in locally-advanced HPV16-driven malignancies.
Pablo Nenclares, Adrian Larkeryd, Floriana Manodoro, Jen Y Lee, Susan Lalondrelle, Benny Chain

Front Oncol· January 2024

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Generation of a C57BL/6J mouse strain expressing the CD45.1 epitope to improve hematopoietic stem cell engraftment and adoptive cell transfer experiments.
Daphné Laubreton, Sophia Djebali, Céline Angleraux, Benny Chain, Maxence Dubois

Lab Anim (NY)· December 2023

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Large clones of pre-existing T cells drive early immunity against SARS-COV-2 and LCMV infection.
Martina Milighetti, Yanchun Peng, Cedric Tan, Michal Mark, Gayathri Nageswaran, Benny Chain

iScience· June 2023

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Viral infection reveals hidden sharing of TCR CDR3 sequences between individuals.
Michal Mark, Shlomit Reich-Zeliger, Erez Greenstein, Adi Biram, Benny Chain

Front Immunol· June 2023

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Evolutionary and immune microenvironment dynamics during neoadjuvant treatment of oesophagael adenocarcinoma.
Melissa Barroux, Jacob Househam, Eszter Lakatos, Tahel Ronel, Ann-Marie Baker, Benny Chain

Res Sq· April 2023

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Signatures of T cell immunity revealed using sequence similarity with TCRDivER algorithm.
Milena Vujović, Paolo Marcatili, Benny Chain, Joseph Kaplinsky, Thomas Lars Andresen

Commun Biol· March 2023

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From pseudo to real-time dynamics of T cell thymic differentiation.
Avishai Gavish, Benny Chain, Tomer M Salame, Yaron E Antebi, Shir Nevo

iScience· January 2023

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Quantifying changes in the T cell receptor repertoire during thymic development.
Francesco Camaglia, Arie Ryvkin, Erez Greenstein, Shlomit Reich-Zeliger, Benny Chain

Elife· January 2023

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The Intra-Tumoral T Cell Receptor Repertoire: Steps Towards a Useful Clinical Biomarker.
Gayathri Nageswaran, Suzanne Byrne, Selvaraju Veeriah, Benny Chain

Methods Mol Biol· September 2022

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A hierarchy of selection pressures determines the organization of the T cell receptor repertoire.
Michal Mark, Shlomit Reich-Zeliger, Erez Greenstein, Dan Reshef, Asaf Madi, Benny Chain

Front Immunol· August 2022

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The importance of taking ART appropriately in children and adolescents with HIV-1 to reach the highest capacity of immune function later in life.
Katrine Schou Sandgaard, Triantafylia Gkouleli, Teresa Attenborough, Stuart Adams, Deena Gibbons, Benny Chain

Front Immunol· August 2022

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