Publications by authors named "Benoit Ballester"

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Accuracy, consistency, and contextual understanding of large language models in restorative dentistry and endodontics.
Claire Lafourcade, Olivia Kérourédan, Benoit Ballester, Raphael Richert

J Dent· June 2025

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Morphological changes in the human mandible associated with the presence of exostoses: A cross-sectional study in two archaeological populations from southern France.
Estelle Casazza, Benoit Ballester, Camille Philip-Alliez, Yann Ardagna, Anne Raskin

PLoS One· May 2025

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Integrating genetic variation with deep learning provides context for variants impacting transcription factor binding during embryogenesis.
Olga M Sigalova, Mattia Forneris, Frosina Stojanovska, Bingqing Zhao, Rebecca R Viales, Benoît Ballester

Genome Res· May 2025

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Comprehensive mapping of genetic variation at Epromoters reveals pleiotropic association with multiple disease traits.
Jing Wan, Antoinette van Ouwerkerk, Jean-Christophe Mouren, Carla Heredia, Lydie Pradel, Benoit Ballester

Nucleic Acids Res· February 2025

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MUFFIN: a suite of tools for the analysis of functional sequencing data.
Pierre de Langen, Benoit Ballester

NAR Genom Bioinform· June 2024

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Evaluation of a new 3D-printed tooth model allowing preoperative ICDAS assessment and caries removal.
Benoit Ballester, Virginie Pilliol, Perrine Allaerd, Bruno Jacquot, Maud Guivarc'h

Eur J Dent Educ· February 2024

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Characterizing intergenic transcription at RNA polymerase II binding sites in normal and cancer tissues.
Pierre de Langen, Fayrouz Hammal, Elise Guéret, Jean-Christophe Mouren, Lionel Spinelli, Benoit Ballester

Cell Genom· October 2023

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Relationship between bruxism and mandibular bone modifications based on medical imaging: a scoping review.
Estelle Casazza, Benoit Ballester, Blanche Siaud, Camille Philip-Alliez, Anne Raskin

BMC Oral Health· July 2023

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ChagasDB: 80 years of publicly available data on the molecular host response to Trypanosoma cruzi infection in a single database.
Pauline Brochet, Jean-Christophe Mouren, Laurent Hannouche, Fabrice Lopez, Benoit Ballester

Database (Oxford)· May 2023

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Evaluation of mandibular bone density in bruxers: the value of panoramic radiographs.
Estelle Casazza, Benoit Ballester, Camille Philip-Alliez, Anne Raskin

Oral Radiol· January 2023

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Suitability of Reusing Pre-Doctoral Student Activity Data from an Educational Information System for Quality Measures of Caries Risk.
Benoit Ballester, Estelle Casazza, Frédéric Bukiet, Jean-Charles Dufour

Stud Health Technol Inform· May 2022

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ECHO: An Information System for the Monitoring and Evaluation of Dental Student Activity in a Pre-Doctoral Clinic.
Benoit Ballester, Frédéric Bukiet, Jean-Charles Dufour

Stud Health Technol Inform· May 2022

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Correction to: Current state of dental informatics in the field of health information systems: a scoping review.
Benoit Ballester, Frédéric Bukiet, Jean-Charles Dufour

BMC Oral Health· May 2022

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Current state of dental informatics in the field of health information systems: a scoping review.
Ballester Benoit, Bukiet Frédéric, Dufour Jean-Charles

BMC Oral Health· April 2022

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ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments.
Fayrouz Hammal, Pierre de Langen, Aurélie Bergon, Fabrice Lopez, Benoit Ballester

Nucleic Acids Res· January 2022

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JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.
Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Benoit Ballester

Nucleic Acids Res· January 2022

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Current strategies for conservative endodontic access cavity preparation techniques-systematic review, meta-analysis, and decision-making protocol.
Benoit Ballester, Thomas Giraud, Hany Mohamed Aly Ahmed, Mohamed Shady Nabhan, Frédéric Bukiet

Clin Oral Investig· November 2021

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Anomaly detection in genomic catalogues using unsupervised multi-view autoencoders.
Quentin Ferré, Jeanne Chèneby, Denis Puthier, Cécile Capponi, Benoît Ballester

BMC Bioinformatics· September 2021

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A predictable conserved DNA base composition signature defines human core DNA replication origins.
Ildem Akerman, Bahar Kasaai, Alina Bazarova, Pau Biak Sang, Isabelle Peiffer, Benoit Ballester

Nat Commun· September 2020

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Author Correction: Involvement of G-quadruplex regions in mammalian replication origin activity.
Paulina Prorok, Marie Artufel, Antoine Aze, Philippe Coulombe, Isabelle Peiffer, Benoit Ballester

Nat Commun· June 2020

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Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study.
Giovanna Ambrosini, Ilya Vorontsov, Dmitry Penzar, Romain Groux, Oriol Fornes, Benoit Ballester

Genome Biol· May 2020

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ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
Jeanne Chèneby, Zacharie Ménétrier, Martin Mestdagh, Thomas Rosnet, Allyssa Douida, Benoit Ballester

Nucleic Acids Res· January 2020

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JASPAR 2020: update of the open-access database of transcription factor binding profiles.
Oriol Fornes, Jaime A Castro-Mondragon, Aziz Khan, Robin van der Lee, Xi Zhang, Benoit Ballester

Nucleic Acids Res· January 2020

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A map of direct TF-DNA interactions in the human genome.
Marius Gheorghe, Geir Kjetil Sandve, Aziz Khan, Jeanne Chèneby, Benoit Ballester

Nucleic Acids Res· August 2019

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Involvement of G-quadruplex regions in mammalian replication origin activity.
Paulina Prorok, Marie Artufel, Antoine Aze, Philippe Coulombe, Isabelle Peiffer, Benoit Ballester

Nat Commun· July 2019

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