Publications by authors named "Birgitte Regenberg"

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Extrachromosomal circular miRNA-gene amplifications contribute to the renal cancer phenotype.
Peng Han, Wei Lv, Zhe Xu, Tianxi Yu, Shan Gao, Birgitte Regenberg

Cell Rep· December 2025

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DNA Circles as Vehicles for Genes to Evade Chromosomal Discipline.
Monica Rojas-Triana, Jacobus J Boomsma, Birgitte Regenberg

Genome Biol Evol· November 2025

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Spatial-Temporal Diversity of Extrachromosomal DNA Shapes Urothelial Carcinoma Evolution and the Tumor Immune Microenvironment.
Wei Lv, Yuchen Zeng, Conghui Li, Yuan Liang, Huiying Tao, Birgitte Regenberg

Cancer Discov· May 2025

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Spatial-Temporal Diversity of Extrachromosomal DNA Shapes Urothelial Carcinoma Evolution and Tumor-Immune Microenvironment.
Wei Lv, Yuchen Zeng, Conghui Li, Yuan Liang, Huiying Tao, Birgitte Regenberg

Cancer Discov· March 2025

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EccDNA atlas in male mice reveals features protecting genes against transcription-induced eccDNA formation.
Xue Liang, Gerard Arrey, Yating Qin, Lucía Álvarez-González, Judith Mary Hariprakash, Birgitte Regenberg

Nat Commun· February 2025

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Molecular mechanisms of extrachromosomal circular DNA formation.
Rasmus A B Eugen-Olsen, Judith M Hariprakash, Vibe H Oestergaard, Birgitte Regenberg

Nucleic Acids Res· February 2025

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Microfluidic isolation of extrachromosomal circular DNA through selective digestion of plasmids and linear DNA using immobilized nucleases.
Egija Zole, Gowtham Sathyanarayanan, Birgitte Regenberg, Jörg P Kutter

Lab Chip· June 2024

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Extrachromosomal Circular DNA: An Emerging Potential Biomarker for Inflammatory Bowel Diseases?
Valentina Petito, Federica Di Vincenzo, Lorenza Putignani, Maria T Abreu, Birgitte Regenberg

Genes (Basel)· March 2024

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Methods for the purification and detection of single nucleotide KRAS mutations on extrachromosomal circular DNA in human plasma.
Lasse Bøllehuus Hansen, Sandra Fugl Jakobsen, Egija Zole, Julie Boertmann Noer, Li Tai Fang, Birgitte Regenberg

Cancer Med· September 2023

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Variation of extrachromosomal circular DNA in cancer cell lines.
Carl Rung Dos Santos, Lasse Bøllehuus Hansen, Monica Rojas-Triana, Astrid Zedlitz Johansen, Mirna Perez-Moreno, Birgitte Regenberg

Comput Struct Biotechnol J· August 2023

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Circular and Circulating DNA in Inflammatory Bowel Disease: From Pathogenesis to Potential Molecular Therapies.
Federica Di Vincenzo, Ylenia Yadid, Valentina Petito, Valeria Emoli, Letizia Masi, Birgitte Regenberg

Cells· July 2023

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Did circular DNA shape the evolution of mammalian genomes?
Sylvester Holt, Gerard Arrey, Birgitte Regenberg

Trends Biochem Sci· April 2023

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CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences.
Visanu Wanchai, Piroon Jenjaroenpun, Thongpan Leangapichart, Gerard Arrey, Charles M Burnham, Birgitte Regenberg

Brief Bioinform· November 2022

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A unifying model for extrachromosomal circular DNA load in eukaryotic cells.
Gerard Arrey, Samuel T Keating, Birgitte Regenberg

Semin Cell Dev Biol· August 2022

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Extrachromosomal circular DNA in cancer: history, current knowledge, and methods.
Julie B Noer, Oskar K Hørsdal, Xi Xiang, Yonglun Luo, Birgitte Regenberg

Trends Genet· July 2022

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Targeted removal of mitochondrial DNA from mouse and human extrachromosomal circular DNA with CRISPR-Cas9.
Weijia Feng, Gerard Arrey, Egija Zole, Wei Lv, Xue Liang, Birgitte Regenberg

Comput Struct Biotechnol J· June 2022

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Circle-Seq reveals genomic and disease-specific hallmarks in urinary cell-free extrachromosomal circular DNAs.
Wei Lv, Xiaoguang Pan, Peng Han, Ziyu Wang, Weijia Feng, Birgitte Regenberg

Clin Transl Med· April 2022

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Circular DNA in the human germline and its association with recombination.
Rasmus Amund Henriksen, Piroon Jenjaroenpun, Ida Borup Sjøstrøm, Kristian Reveles Jensen, Iñigo Prada-Luengo, Birgitte Regenberg

Mol Cell· January 2022

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Isolation, characterization, and genome assembly of Barnettozyma botsteinii sp. nov. and novel strains of Kurtzmaniella quercitrusa isolated from the intestinal tract of the termite Macrotermes bellicosus.
Gerard Arrey, Guangshuo Li, Robert Murphy, Leandro Guimaraes, Sefa Alizadeh, Birgitte Regenberg

G3 (Bethesda)· December 2021

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Replicative aging is associated with loss of genetic heterogeneity from extrachromosomal circular DNA in Saccharomyces cerevisiae.
Iñigo Prada-Luengo, Henrik D Møller, Rasmus A Henriksen, Qian Gao, Camilla Eggert Larsen, Birgitte Regenberg

Nucleic Acids Res· August 2020

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What Is Extrachromosomal Circular DNA and What Does It Do?
Rossa W K Chiu, Anindya Dutta, Anton G Hensson, Y M Dennis Lo, Paul Mischel, Birgitte Regenberg

Clin Chem· June 2020

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Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome.
Henrik Devitt Møller, Jazmín Ramos-Madrigal, Iñigo Prada-Luengo, M Thomas P Gilbert, Birgitte Regenberg

Genome Biol Evol· January 2020

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Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads.
Iñigo Prada-Luengo, Anders Krogh, Lasse Maretty, Birgitte Regenberg

BMC Bioinformatics· December 2019

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To Be or Not to Be: Circular RNAs or mRNAs From Circular DNAs?
Leire Iparraguirre, Iñigo Prada-Luengo, Birgitte Regenberg, David Otaegui

Front Genet· October 2019

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RNAi as a Tool to Study Virulence in the Pathogenic Yeast .
Olena P Ishchuk, Khadija Mohamed Ahmad, Katarina Koruza, Klara Bojanovič, Marcel Sprenger, Birgitte Regenberg

Front Microbiol· July 2019

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