Publications by authors named "Blake G Lindner"

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SourceApp: A Novel Metagenomic Source Tracking Tool that can Distinguish between Fecal Microbiomes Using Genome-To-Source Associations Benchmarked Against Mixed Input Spike-In Mesocosms.
Blake G Lindner, Katherine E Graham, Jacob R Phaneuf, Janet K Hatt, Konstantinos T Konstantinidis

Environ Sci Technol· May 2025

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Advancing Source Tracking: Systematic Review and Source-Specific Genome Database Curation of Fecally Shed Prokaryotes.
Blake G Lindner, Rakin A Choudhury, Princess Pinamang, Lilia Bingham, Isabelle D'Amico

Environ Sci Technol Lett· September 2024

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Metagenomic insights into the impact of litter from poultry Concentrated Animal Feeding Operations (CAFOs) to adjacent soil and water microbial communities.
Ana Durán-Viseras, Blake G Lindner, Janet K Hatt, Amanda Lai, Robert Wallace

Sci Total Environ· April 2024

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Potential routes of plastics biotransformation involving novel plastizymes revealed by global multi-omic analysis of plastic associated microbes.
Rodney S Ridley, Roth E Conrad, Blake G Lindner, Seongwook Woo, Konstantinos T Konstantinidis

Sci Rep· April 2024

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A user's guide to the bioinformatic analysis of shotgun metagenomic sequence data for bacterial pathogen detection.
Blake G Lindner, Kenji Gerhardt, Dorian J Feistel, Luis M Rodriguez-R, Janet K Hatt

Int J Food Microbiol· January 2024

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An ANI gap within bacterial species that advances the definitions of intra-species units.
Luis M Rodriguez-R, Roth E Conrad, Tomeu Viver, Dorian J Feistel, Blake G Lindner

mBio· January 2024

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Fecal microbiota transplantation promotes reduction of antimicrobial resistance by strain replacement.
Michael H Woodworth, Roth E Conrad, Marina Haldopoulos, Stephanie M Pouch, Ahmed Babiker, Blake G Lindner

Sci Transl Med· November 2023

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Parallel deployment of passive and composite samplers for surveillance and variant profiling of SARS-CoV-2 in sewage.
Gyuhyon Cha, Katherine E Graham, Kevin J Zhu, Gouthami Rao, Blake G Lindner

Sci Total Environ· March 2023

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Toward shotgun metagenomic approaches for microbial source tracking sewage spills based on laboratory mesocosms.
Blake G Lindner, Brittany Suttner, Kevin J Zhu, Roth E Conrad, Luis M Rodriguez-R

Water Res· February 2022

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