Publications by authors named "Blue B Lake"

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A multimodal and integrated approach to interrogate human kidney biopsies with rigor and reproducibility: guidelines from the Kidney Precision Medicine Project.
Tarek M El-Achkar, Michael T Eadon, Rajasree Menon, Blue B Lake, Tara K Sigdel, Theodore Alexandrov, Samir Parikh, Guanshi Zhang, Dejan Dobi, Kenneth W Dunn

Physiol Genomics· January 2021

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Cellular and Spatial Drivers of Unresolved Injury and Functional Decline in the Human Kidney.
Blue B Lake, Ricardo Melo Ferreira, Jens Hansen, Rajasree Menon, Jeannine Basta

bioRxiv· November 2025

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A transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease.
Ricardo Melo Ferreira, Debora L Gisch, Carrie L Phillips, Ying-Hua Cheng, Maansi Asthana, Blue B Lake

bioRxiv· December 2024

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Mapping human tissues with highly multiplexed RNA in situ hybridization.
Kian Kalhor, Chien-Ju Chen, Ho Suk Lee, Matthew Cai, Mahsa Nafisi, Blue B Lake

Nat Commun· March 2024

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The chromatin landscape of healthy and injured cell types in the human kidney.
Debora L Gisch, Michelle Brennan, Blue B Lake, Jeannine Basta, Mark S Keller

Nat Commun· January 2024

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Mapping Human Tissues with Highly Multiplexed RNA in situ Hybridization.
Kian Kalhor, Chien-Ju Chen, Ho Suk Lee, Matthew Cai, Mahsa Nafisi, Blue B Lake

bioRxiv· August 2023

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A spatially anchored transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease.
Victor Hugo Canela, William S Bowen, Ricardo Melo Ferreira, Farooq Syed, James E Lingeman, Blue B Lake

Nat Commun· July 2023

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An atlas of healthy and injured cell states and niches in the human kidney.
Blue B Lake, Rajasree Menon, Seth Winfree, Qiwen Hu, Ricardo Melo Ferreira

Nature· July 2023

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The chromatin landscape of healthy and injured cell types in the human kidney.
Debora L Gisch, Michelle Brennan, Blue B Lake, Jeannine Basta, Mark Keller

bioRxiv· June 2023

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Integrated single-cell sequencing and histopathological analyses reveal diverse injury and repair responses in a participant with acute kidney injury: a clinical-molecular-pathologic correlation.
Rajasree Menon, Andrew S Bomback, Blue B Lake, Christy Stutzke, Stephanie M Grewenow

Kidney Int· June 2022

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A reference tissue atlas for the human kidney.
Jens Hansen, Rachel Sealfon, Rajasree Menon, Michael T Eadon, Blue B Lake

Sci Adv· June 2022

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Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.
Trygve E Bakken, Nikolas L Jorstad, Qiwen Hu, Blue B Lake, Wei Tian

Nature· April 2022

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Scalable dual-omics profiling with single-nucleus chromatin accessibility and mRNA expression sequencing 2 (SNARE-seq2).
Nongluk Plongthongkum, Dinh Diep, Song Chen, Blue B Lake, Kun Zhang

Nat Protoc· November 2021

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Comparative cellular analysis of motor cortex in human, marmoset and mouse.
Trygve E Bakken, Nikolas L Jorstad, Qiwen Hu, Blue B Lake, Wei Tian

Nature· October 2021

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The role of the NMD factor UPF3B in olfactory sensory neurons.
Kun Tan, Samantha H Jones, Blue B Lake, Jennifer N Chousal, Eleen Y Shum

Elife· August 2020

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High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell.
Song Chen, Blue B Lake, Kun Zhang

Nat Biotechnol· December 2019

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Cellular Recruitment by Podocyte-Derived Pro-migratory Factors in Assembly of the Human Renal Filter.
Albert D Kim, Blue B Lake, Song Chen, Yan Wu, Jinjin Guo

iScience· October 2019

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A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys.
Blue B Lake, Song Chen, Masato Hoshi, Nongluk Plongthongkum, Diane Salamon

Nat Commun· June 2019

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Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain.
Blue B Lake, Song Chen, Brandon C Sos, Jean Fan, Gwendolyn E Kaeser

Nat Biotechnol· January 2018

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A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA.
Blue B Lake, Simone Codeluppi, Yun C Yung, Derek Gao, Jerold Chun

Sci Rep· July 2017

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The Homeobox Transcription Factor RHOX10 Drives Mouse Spermatogonial Stem Cell Establishment.
Hye-Won Song, Anilkumar Bettegowda, Blue B Lake, Adrienne H Zhao, David Skarbrevik

Cell Rep· September 2016

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Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.
Blue B Lake, Rizi Ai, Gwendolyn E Kaeser, Neeraj S Salathia, Yun C Yung

Science· June 2016

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Role of Rab11 in planar cell polarity and apical constriction during vertebrate neural tube closure.
Olga Ossipova, Kyeongmi Kim, Blue B Lake, Keiji Itoh, Andriani Ioannou

Nat Commun· May 2014

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Genetic approach to track neural cell fate decisions using human embryonic stem cells.
Xuemei Fu, Zhili Rong, Shengyun Zhu, Xiaocheng Wang, Yang Xu, Blue B Lake

Protein Cell· January 2014

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Rab11 regulates planar polarity and migratory behavior of multiciliated cells in Xenopus embryonic epidermis.
Kyeongmi Kim, Blue B Lake, Tomomi Haremaki, Daniel C Weinstein, Sergei Y Sokol

Dev Dyn· September 2012

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