Publications by authors named "Bokai Zhu"

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A Mouse Model of Lipoatrophy Reveals Relationships Between Beige Fat Appearance and Female Fertility.
Elizabeth S Anaya, William Dion, Pradip K Saha, Aaron R Cox, Evelyn de Groot, Bokai Zhu

Endocrinology· December 2025

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Branched chain amino acids prime metabolic inflammation.
Nandini K Doshi, Tristan Pesaresi, Trishya Pagadala, William Dion, Yang Zhang, Bokai Zhu

Mol Metab· December 2025

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Multi-scaled transcriptomics of chronically inflamed nasal epithelium reveals immune-epithelial dynamics and tissue remodeling in nasal polyp formation.
Guanrui Liao, Tsuguhisa Nakayama, Bokai Zhu, Ivan T Lee, Jason Yeung

Immunity· October 2025

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SON-dependent nuclear speckle rehabilitation alleviates proteinopathies.
William Dion, Yuren Tao, Maci Chambers, Shanshan Zhao, Riley K Arbuckle, Bokai Zhu

Nat Commun· August 2025

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CellLENS enables cross-domain information fusion for enhanced cell population delineation in single-cell spatial omics data.
Bokai Zhu, Sheng Gao, Shuxiao Chen, Yuchen Wang, Jason Yeung

Nat Immunol· June 2025

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SON-dependent nuclear speckle rehabilitation alleviates proteinopathies.
William Dion, Yuren Tao, Maci Chambers, Shanshan Zhao, Riley K Arbuckle, Bokai Zhu

bioRxiv· April 2025

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The SET1/COMPASS subunit RBBP5 orchestrates epigenetic control of global proteostasis and the 12h oscillator to safeguard metabolic and cellular homeostasis.
Syeda Kubra, Michelle Sun, William Dion, Ahmet Catak, Hannah Luong, Bokai Zhu

bioRxiv· April 2025

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Quantitative characterization of tissue states using multiomics and ecological spatial analysis.
Daisy Yi Ding, Zeyu Tang, Bokai Zhu, Hongyu Ren, Alex K Shalek

Nat Genet· April 2025

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A multi-omics spatial framework for host-microbiome dissection within the intestinal tissue microenvironment.
Bokai Zhu, Yunhao Bai, Yao Yu Yeo, Xiaowei Lu, Xavier Rovira-Clavé

Nat Commun· January 2025

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Same-Slide Spatial Multi-Omics Integration Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment.
Yao Yu Yeo, Yuzhou Chang, Huaying Qiu, Stephanie Pei Tung Yiu, Hendrik A Michel, Bokai Zhu

bioRxiv· December 2024

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Basic research and opportunities for translational advancement in the field of mammalian ∼12-hour ultradian chronobiology.
William Dion, Bokai Zhu

Front Physiol· November 2024

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A TBK1-independent primordial function of STING in lysosomal biogenesis.
Bo Lv, William A Dion, Haoxiang Yang, Jinrui Xun, Do-Hyung Kim, Bokai Zhu

Mol Cell· October 2024

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Evidence for ~12-h ultradian gene programs in humans.
Bokai Zhu, Silvia Liu, Natalie L David, William Dion, Nandini K Doshi

NPJ Biol Timing Sleep· August 2024

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Integration of spatial and single-cell data across modalities with weakly linked features.
Shuxiao Chen, Bokai Zhu, Sijia Huang, John W Hickey, Kevin Z Lin

Nat Biotechnol· July 2024

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A Hitchhiker's guide to high-dimensional tissue imaging with multiplexed ion beam imaging.
Yao Yu Yeo, Precious Cramer, Addison Deisher, Yunhao Bai, Bokai Zhu

Methods Cell Biol· May 2024

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Epigenetically active chromatin in neonatal iWAT reveals GABPα as a potential regulator of beige adipogenesis.
Raja Gopal Reddy Mooli, Bokai Zhu, Saifur R Khan, Veerababu Nagati, Kulandaimanuvel Antony Michealraj

Front Endocrinol (Lausanne)· May 2024

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Methionine as a regulator of bone remodeling with fasting.
Tânia Amorim, Naveen Gv Kumar, Natalie L David, William Dion, Trishya Pagadala, Bokai Zhu

JCI Insight· May 2024

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Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data.
Bokai Zhu, Sheng Gao, Shuxiao Chen, Jason Yeung, Yunhao Bai

bioRxiv· May 2024

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Activation of Peroxisome Proliferator-Activated Receptor-β/δ (PPARβ/δ) in Keratinocytes by Endogenous Fatty Acids.
Bokai Zhu, Xiaoyang Zhu, Michael G Borland, Douglas H Ralph, Christopher R Chiaro

Biomolecules· May 2024

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A Spatial Multi-Modal Dissection of Host-Microbiome Interactions within the Colitis Tissue Microenvironment.
Bokai Zhu, Yunhao Bai, Yao Yu Yeo, Xiaowei Lu, Xavier Rovira-Clavé

bioRxiv· March 2024

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Epstein-Barr Virus Orchestrates Spatial Reorganization and Immunomodulation within the Classic Hodgkin Lymphoma Tumor Microenvironment.
Yao Yu Yeo, Huaying Qiu, Yunhao Bai, Bokai Zhu, Yuzhou Chang

bioRxiv· March 2024

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MAPS: pathologist-level cell type annotation from tissue images through machine learning.
Muhammad Shaban, Yunhao Bai, Huaying Qiu, Shulin Mao, Jason Yeung, Bokai Zhu

Nat Commun· January 2024

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A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity.
Anand G Patel, Orr Ashenberg, Natalie B Collins, Åsa Segerstolpe, Sizun Jiang, Bokai Zhu

bioRxiv· January 2024

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LEF1 isoforms regulate cellular senescence and aging.
Minxue Jia, Khaled Sayed, Maria G Kapetanaki, William Dion, Lorena Rosas, Bokai Zhu

Aging Cell· December 2023

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T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response.
John W Hickey, Maximillian Haist, Nina Horowitz, Chiara Caraccio, Yuqi Tan, Bokai Zhu

Cell Rep· December 2023

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