Publications by authors named "Bomyi Lim"

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Configuring the Code: Enhancer-Promoter Arrangement and Transcriptional Regulation.
Noel Buitrago, J Andres Vidal, Bomyi Lim

J Mol Biol· January 2026

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SCO-ph: Microfluidic Dynamic Phenotyping Platform for High-Throughput Screening of Single Cell Acidification.
Hyejoong Jeong, Emilia A Leyes Porello, Jean G Rosario, Da Kuang, Syung Hun Han, Bomyi Lim

Small· August 2025

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Enhancer Placement Impacts Transcriptional Dynamics in Embryos.
Emilia A Leyes Porello, Jiayi Wu, Samantha Fallacaro, Emma Dreispiel Juan, Robert T Trudeau, Bomyi Lim

bioRxiv· August 2025

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Regulation of Transcriptional Bursting and Spatial Patterning in Early Embryo Development.
César Nieto, Zahra Vahdat, Bomyi Lim, Abhyudai Singh

bioRxiv· May 2025

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Heterogeneous Sox2 transcriptional dynamics mediate pluripotency maintenance in mESCs in response to LIF signaling perturbations.
Gaochen Jin, Emilia A Leyes Porello, Jingchao Zhang, Bomyi Lim

bioRxiv· March 2025

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Multi-labeling Live Imaging to Quantify Gene Expression Dynamics During Drosophila Embryonic Development.
Sahla Syed, Bomyi Lim

Methods Mol Biol· July 2024

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Protocol to quantify the rate of RNA polymerase II elongation with MS2/MCP- and PP7/PCP-based live-imaging systems in early Drosophila embryos.
Hao Deng, Bomyi Lim

STAR Protoc· June 2024

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SCO-pH: Microfluidic dynamic phenotyping platform for high-throughput screening of single cell acidification.
Hyejoong Jeong, Emilia A Leyes Porello, Jean Gabriel Rosario, Da Kuang, Syung Hun Han, Bomyi Lim

bioRxiv· May 2024

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Multifaceted effects on even-skipped transcriptional dynamics upon Krüppel dosage changes.
Shufan Lin, Bomyi Lim

Development· March 2024

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Modulation of protein-DNA binding reveals mechanisms of spatiotemporal gene control in early embryos.
Sahla Syed, Yifei Duan, Bomyi Lim

Elife· November 2023

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Regulation of the dynamic RNA Pol II elongation rate in Drosophila embryos.
Samuel H Keller, Hao Deng, Bomyi Lim

Cell Rep· October 2023

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Transcriptional bursting: stochasticity in deterministic development.
Emilia A Leyes Porello, Robert T Trudeau, Bomyi Lim

Development· June 2023

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Modulation of protein-DNA binding reveals mechanisms of spatiotemporal gene control in early embryos.
Sahla Syed, Yifei Duan, Bomyi Lim

bioRxiv· January 2023

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Unveiling dynamic enhancer-promoter interactions in Drosophila melanogaster.
Hao Deng, Gaochen Jin, Bomyi Lim

Biochem Soc Trans· December 2022

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Shared Transcriptional Machinery at Homologous Alleles Leads to Reduced Transcription in Early Embryos.
Hao Deng, Bomyi Lim

Front Cell Dev Biol· July 2022

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Epigenome editing and epigenetic gene regulation in disease phenotypes.
Gaochen Jin, Bomyi Lim

Korean J Chem Eng· June 2022

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Temperature-responsive optogenetic probes of cell signaling.
William Benman, Erin E Berlew, Hao Deng, Caitlyn Parker, Ivan A Kuznetsov, Bomyi Lim

Nat Chem Biol· February 2022

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Author Correction: Diverse heterochromatin-associated proteins repress distinct classes of genes and repetitive elements.
Ryan L McCarthy, Kelsey E Kaeding, Samuel H Keller, Yu Zhong, Liqin Xu, Bomyi Lim

Nat Cell Biol· November 2021

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Diverse heterochromatin-associated proteins repress distinct classes of genes and repetitive elements.
Ryan L McCarthy, Kelsey E Kaeding, Samuel H Keller, Yu Zhong, Liqin Xu, Bomyi Lim

Nat Cell Biol· August 2021

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Enhancer-promoter communication: hubs or loops?
Bomyi Lim, Michael S Levine

Curr Opin Genet Dev· April 2021

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The nuclear to cytoplasmic ratio directly regulates zygotic transcription in through multiple modalities.
Sahla Syed, Henry Wilky, João Raimundo, Bomyi Lim, Amanda A Amodeo

Proc Natl Acad Sci U S A· April 2021

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Regulation of spatiotemporal limits of developmental gene expression via enhancer grammar.
Samuel H Keller, Siddhartha G Jena, Yuji Yamazaki, Bomyi Lim

Proc Natl Acad Sci U S A· June 2020

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Imaging transcriptional dynamics.
Bomyi Lim

Curr Opin Biotechnol· August 2018

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Temporal dynamics of pair-rule stripes in living embryos.
Bomyi Lim, Takashi Fukaya, Tyler Heist, Michael Levine

Proc Natl Acad Sci U S A· August 2018

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Visualization of Transvection in Living Drosophila Embryos.
Bomyi Lim, Tyler Heist, Michael Levine, Takashi Fukaya

Mol Cell· April 2018

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