Publications by authors named "Brian A Firek"

Claim this Profile
I
Infant gut DNA bacteriophage strain persistence during the first 3 years of life.
Yue Clare Lou, LinXing Chen, Adair L Borges, Jacob West-Roberts, Brian A Firek

Cell Host Microbe· January 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data.
George I Austin, Heekuk Park, Yoli Meydan, Dwayne Seeram, Tanya Sezin, Brian A Firek

Nat Biotechnol· December 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
U
Using strain-resolved analysis to identify contamination in metagenomics data.
Yue Clare Lou, Jordan Hoff, Matthew R Olm, Jacob West-Roberts, Spencer Diamond, Brian A Firek

Microbiome· March 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Sustained Dysbiosis and Decreased Fecal Short-Chain Fatty Acids after Traumatic Brain Injury and Impact on Neurologic Outcome.
Oluwasinmisola M Opeyemi, Matthew B Rogers, Brian A Firek, Keri Janesko-Feldman, Vincent Vagni

J Neurotrauma· September 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition.
Yue Clare Lou, Matthew R Olm, Spencer Diamond, Alexander Crits-Christoph, Brian A Firek

Cell Rep Med· September 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains.
Matthew R Olm, Alexander Crits-Christoph, Keith Bouma-Gregson, Brian A Firek, Michael J Morowitz

Nat Biotechnol· June 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics.
Patrick T West, Samantha L Peters, Matthew R Olm, Feiqiao B Yu, Haley Gause, Brian A Firek

Microbiome· June 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Depletion of gut microbiota is associated with improved neurologic outcome following traumatic brain injury.
Dennis W Simon, Matthew B Rogers, Yuan Gao, Garret Vincent, Brian A Firek

Brain Res· November 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
N
Necrotizing enterocolitis is preceded by increased gut bacterial replication, , and fimbriae-encoding bacteria.
Matthew R Olm, Nicholas Bhattacharya, Alexander Crits-Christoph, Brian A Firek, Robyn Baker

Sci Adv· December 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants.
Kathyayini P Gopalakrishna, Benjamin R Macadangdang, Matthew B Rogers, Justin T Tometich, Brian A Firek

Nat Med· July 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.
Matthew R Olm, Patrick T West, Brandon Brooks, Brian A Firek, Robyn Baker

Microbiome· February 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms.
Brandon Brooks, Matthew R Olm, Brian A Firek, Robyn Baker, David Geller-McGrath

Microbiome· June 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Safety, Clinical Response, and Microbiome Findings Following Fecal Microbiota Transplant in Children With Inflammatory Bowel Disease.
Alka Goyal, Andrew Yeh, Brian R Bush, Brian A Firek, Leah M Siebold

Inflamm Bowel Dis· January 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.
Brandon Brooks, Matthew R Olm, Brian A Firek, Robyn Baker, Brian C Thomas

Nat Commun· November 2017

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants.
Brandon Brooks, Brian A Firek, Christopher S Miller, Itai Sharon, Brian C Thomas

Microbiome· January 2014

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Structure and energetics of encapsidated DNA in bacteriophage HK97 studied by scanning calorimetry and cryo-electron microscopy.
Robert L Duda, Philip D Ross, Naiqian Cheng, Brian A Firek, Roger W Hendrix

J Mol Biol· August 2009

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Mutational analysis of a conserved glutamic acid required for self-catalyzed cross-linking of bacteriophage HK97 capsids.
Lindsay E Dierkes, Craig L Peebles, Brian A Firek, Roger W Hendrix, Robert L Duda

J Virol· March 2009

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A free energy cascade with locks drives assembly and maturation of bacteriophage HK97 capsid.
Philip D Ross, James F Conway, Naiqian Cheng, Lindsay Dierkes, Brian A Firek

J Mol Biol· December 2006

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Capsid conformational sampling in HK97 maturation visualized by X-ray crystallography and cryo-EM.
Lu Gan, Jeffrey A Speir, James F Conway, Gabriel Lander, Naiqian Cheng, Brian A Firek

Structure· November 2006

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Crosslinking renders bacteriophage HK97 capsid maturation irreversible and effects an essential stabilization.
Philip D Ross, Naiqian Cheng, James F Conway, Brian A Firek, Roger W Hendrix

EMBO J· April 2005

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Control of crosslinking by quaternary structure changes during bacteriophage HK97 maturation.
Lu Gan, James F Conway, Brian A Firek, Naiqian Cheng, Roger W Hendrix

Mol Cell· June 2004

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The Staphylococcus aureus cidAB operon: evaluation of its role in regulation of murein hydrolase activity and penicillin tolerance.
Kelly C Rice, Brian A Firek, Jeremy B Nelson, Soo-Jin Yang, Toni G Patton

J Bacteriol· April 2003

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis