Publications by authors named "Bridget McInnes"

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Predicting implicit concept embeddings for singular relationship discovery replication of closed literature-based discovery.
Clint Cuffy, Bridget T McInnes

Front Res Metr Anal· March 2025

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CACER: Clinical concept Annotations for Cancer Events and Relations.
Yujuan Velvin Fu, Giridhar Kaushik Ramachandran, Ahmad Halwani, Bridget T McInnes, Fei Xia

J Am Med Inform Assoc· November 2024

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Semantics-enabled biomedical literature analytics.
Halil Kilicoglu, Faezeh Ensan, Bridget McInnes, Lucy Lu Wang

J Biomed Inform· February 2024

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Exploring a deep learning neural architecture for closed Literature-based discovery.
Clint Cuffy, Bridget T McInnes

J Biomed Inform· July 2023

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An overview of biomedical entity linking throughout the years.
Evan French, Bridget T McInnes

J Biomed Inform· January 2023

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Temporal disambiguation of relative temporal expressions in clinical texts.
Amy L Olex, Bridget T McInnes

Front Res Metr Anal· October 2022

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Attention-Based Models for Classifying Small Data Sets Using Community-Engaged Research Protocols: Classification System Development and Validation Pilot Study.
Brian J Ferrell, Sarah E Raskin, Emily B Zimmerman, David H Timberline, Bridget T McInnes

JMIR Form Res· September 2022

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Call for papers: Semantics-enabled biomedical literature analytics.
Halil Kilicoglu, Faezeh Ensan, Bridget McInnes, Lucy Lu Wang

J Biomed Inform· August 2022

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TopEx: topic exploration of COVID-19 corpora - Results from the BioCreative VII Challenge Track 4.
Amy L Olex, Evan French, Peter Burdette, Srilakshmi Sagiraju, Thomas Neumann, Bridget T McInnes

Database (Oxford)· August 2022

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Cascade Processes with Micellar Reaction Media: Recent Advances and Future Directions.
Christina Tang, Bridget T McInnes

Molecules· August 2022

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Effects of data and entity ablation on multitask learning models for biomedical entity recognition.
Nicholas E Rodriguez, Mai Nguyen, Bridget T McInnes

J Biomed Inform· June 2022

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Discovering Content through Text Mining for a Synthetic Biology Knowledge System.
Bridget T McInnes, J Stephen Downie, Yikai Hao, Jacob Jett, Kevin Keating

ACS Synth Biol· June 2022

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Exploring Representations for Singular and Multi-Concept Relations for Biomedical Named Entity Normalization.
Clint Cuffy, Evan French, Sophia Fehrmann, Bridget T McInnes

Proc Int World Wide Web Conf· April 2022

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Extracting experimental parameter entities from scientific articles.
Steele Farnsworth, Gabrielle Gurdin, Jorge Vargas, Andriy Mulyar, Nastassja Lewinski, Bridget T McInnes

J Biomed Inform· February 2022

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Transferability of neural network clinical deidentification systems.
Kahyun Lee, Nicholas J Dobbins, Bridget McInnes, Meliha Yetisgen, Özlem Uzuner

J Am Med Inform Assoc· November 2021

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MT-clinical BERT: scaling clinical information extraction with multitask learning.
Andriy Mulyar, Ozlem Uzuner, Bridget McInnes

J Am Med Inform Assoc· September 2021

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Synthetic Biology Knowledge System.
Jeanet Mante, Yikai Hao, Jacob Jett, Udayan Joshi, Kevin Keating, Bridget T McInnes

ACS Synth Biol· September 2021

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Extracting Adverse Drug Events from Clinical Notes.
Darshini Mahendran, Bridget T McInnes

AMIA Jt Summits Transl Sci Proc· September 2021

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Pseudo-data generation for the extraction of Problems, Treatments and Tests.
Jeff Smith, Evan French, William Cramer, Ӧzlem Uzuner, Bridget T McInnes

AMIA Jt Summits Transl Sci Proc· September 2021

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Identifying Chemical Reactions and Their Associated Attributes in Patents.
Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T McInnes

Front Res Metr Anal· July 2021

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Review of Temporal Reasoning in the Clinical Domain for Timeline Extraction: Where we are and where we need to be.
Amy L Olex, Bridget T McInnes

J Biomed Inform· June 2021

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Machine Assisted Experimentation of Extrusion-Based Bioprinting Systems.
Shuyu Tian, Rory Stevens, Bridget T McInnes, Nastassja A Lewinski

Micromachines (Basel)· June 2021

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Using Literature Based Discovery to Gain Insights Into the Metabolomic Processes of Cardiac Arrest.
Sam Henry, D Shanaka Wijesinghe, Aidan Myers, Bridget T McInnes

Front Res Metr Anal· June 2021

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Measuring the quality of patient-physician communication.
Clint Cuffy, Nao Hagiwara, Scott Vrana, Bridget T McInnes

J Biomed Inform· December 2020

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Adverse drug event detection using reason assignments in FDA drug labels.
Corey Sutphin, Kahyun Lee, Antonio Jimeno Yepes, Özlem Uzuner, Bridget T McInnes

J Biomed Inform· October 2020

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