Publications by authors named "Bryan Bartley"

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A Decade of SBOL Visual: Growing Adoption of a Diagram Standard for Engineering Biology.
Lukas Buecherl, Felipe X Buson, Georgie Hau Sørensen, Carolus Vitalis, Erik Kubaczka, Bryan Bartley

ACS Synth Biol· October 2025

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Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop.
Breschine Cummins, Justin Vrana, Robert C Moseley, Hamed Eramian, Anastasia Deckard, Bryan Bartley

Synth Biol (Oxf)· March 2023

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Highly-automated, high-throughput replication of yeast-based logic circuit design assessments.
Robert P Goldman, Robert Moseley, Nicholas Roehner, Breschine Cummins, Justin D Vrana, Bryan Bartley

Synth Biol (Oxf)· October 2022

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pySBOL3: SBOL3 for Python Programmers.
Tom Mitchell, Jacob Beal, Bryan Bartley

ACS Synth Biol· July 2022

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Tyto: A Python Tool Enabling Better Annotation Practices for Synthetic Biology Data-Sharing.
Bryan A Bartley

ACS Synth Biol· March 2022

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Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis.
Daniel Bryce, Robert P Goldman, Matthew DeHaven, Jacob Beal, Bryan Bartley

ACS Synth Biol· February 2022

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Synthetic biology open language visual (SBOL Visual) version 2.3.
Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James McLaughlin, Prashant Vaidyanathan, Bryan Bartley

J Integr Bioinform· June 2021

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Engineered yeast genomes accurately assembled from pure and mixed samples.
Joseph H Collins, Kevin W Keating, Trent R Jones, Shravani Balaji, Celeste B Marsan, Bryan Bartley

Nat Commun· March 2021

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Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL).
Bradley Brown, Bryan Bartley, Jacob Beal, Jasmine E Bird, Ángel Goñi-Moreno

ACS Synth Biol· September 2020

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The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering.
James Alastair McLaughlin, Jacob Beal, Göksel Mısırlı, Raik Grünberg, Bryan A Bartley

Front Bioeng Biotechnol· September 2020

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Synthetic biology open language visual (SBOL visual) version 2.2.
Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James McLaughlin, Prashant Vaidyanathan, Bryan Bartley

J Integr Bioinform· June 2020

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Synthetic biology open language (SBOL) version 3.0.0.
Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley

J Integr Bioinform· June 2020

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SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts.
Esteban Martínez-García, Angel Goñi-Moreno, Bryan Bartley, James McLaughlin, Lucas Sánchez-Sampedro

Nucleic Acids Res· April 2020

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ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL).
Matthew Crowther, Lewis Grozinger, Matthew Pocock, Christopher P D Taylor, James A McLaughlin, Bryan A Bartley

ACS Synth Biol· April 2020

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Organizing genome engineering for the gigabase scale.
Bryan A Bartley, Jacob Beal, Jonathan R Karr, Elizabeth A Strychalski

Nat Commun· February 2020

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SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts.
Esteban Martínez-García, Angel Goñi-Moreno, Bryan Bartley, James McLaughlin, Lucas Sánchez-Sampedro

Nucleic Acids Res· January 2020

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Communicating Structure and Function in Synthetic Biology Diagrams.
Jacob Beal, Tramy Nguyen, Thomas E Gorochowski, Angel Goñi-Moreno, James Scott-Brown, Bryan Bartley

ACS Synth Biol· August 2019

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pySBOL: A Python Package for Genetic Design Automation and Standardization.
Bryan A Bartley, Kiri Choi, Meher Samineni, Zach Zundel, Tramy Nguyen

ACS Synth Biol· July 2019

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Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL).
Nicholas Roehner, Bryan Bartley, Jacob Beal, James McLaughlin, Matthew Pocock

ACS Synth Biol· July 2019

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Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.
Curtis Madsen, Angel Goni Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley

J Integr Bioinform· June 2019

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Synthetic Biology Open Language (SBOL) Version 2.3.
Curtis Madsen, Angel Goñi Moreno, Umesh P, Zachary Palchick, Nicholas Roehner, Bryan Bartley

J Integr Bioinform· June 2019

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Synthetic Biology Open Language (SBOL) Version 2.2.0.
Robert Sidney Cox, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley

J Integr Bioinform· April 2018

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Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.
Robert Sidney Cox, Curtis Madsen, James McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley

J Integr Bioinform· March 2018

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Synthetic Biology: Engineering Living Systems from Biophysical Principles.
Bryan A Bartley, Kyung Kim, J Kyle Medley, Herbert M Sauro

Biophys J· March 2017

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Synthetic Biology Open Language (SBOL) Version 2.1.0.
Jacob Beal, Robert Sidney Cox, Raik Grünberg, James McLaughlin, Tramy Nguyen, Bryan Bartley

J Integr Bioinform· December 2016

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