Publications by authors named "Bryan D Merrill"

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Gut-microbiota-targeted diets modulate human immune status.
Hannah C Wastyk, Gabriela K Fragiadakis, Dalia Perelman, Dylan Dahan, Bryan D Merrill, Feiqiao B Yu, Madeline Topf, Carlos G Gonzalez, William Van Treuren, Shuo Han

August 2021

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Strain-resolved metagenomic analysis and qPCR validation suggest is the etiologic agent for infectious diarrhea in severely immunodeficient mice.
Rina Barouch-Bentov, Bryan D Merrill, Wencke Reineking, Roberta Moorhead, Flavio Herberg de Alonso

J Vet Diagn Invest· November 2025

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A genomic atlas of the human gut virome elucidates genetic factors shaping host interactions.
Antonio Pedro Camargo, Fotis A Baltoumas, Eric Olo Ndela, Mateus B Fiamenghi, Bryan D Merrill

bioRxiv· November 2025

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Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes.
Matthew M Carter, Matthew R Olm, Bryan D Merrill, Dylan Dahan, Surya Tripathi

Cell· July 2023

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Ultra-deep Sequencing of Hadza Hunter-Gatherers Recovers Vanishing Gut Microbes.
Bryan D Merrill, Matthew M Carter, Matthew R Olm, Dylan Dahan, Surya Tripathi

bioRxiv· October 2022

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Robust variation in infant gut microbiome assembly across a spectrum of lifestyles.
Matthew R Olm, Dylan Dahan, Matthew M Carter, Bryan D Merrill, Feiqiao B Yu

Science· June 2022

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The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut.
Erin Oi-Yan Wong, Emma Joan Elizabeth Brownlie, Katharine Michelle Ng, Sornnujah Kathirgamanathan, Feiqiao Brian Yu, Bryan D Merrill

mBio· April 2022

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Independent host- and bacterium-based determinants protect a model symbiosis from phage predation.
Jonathan B Lynch, Brittany D Bennett, Bryan D Merrill, Edward G Ruby, Andrew J Hryckowian

Cell Rep· February 2022

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A metabolomics pipeline for the mechanistic interrogation of the gut microbiome.
Shuo Han, Will Van Treuren, Curt R Fischer, Bryan D Merrill, Brian C DeFelice

Nature· July 2021

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Community-led, integrated, reproducible multi-omics with anvi'o.
A Murat Eren, Evan Kiefl, Alon Shaiber, Iva Veseli, Samuel E Miller, Bryan D Merrill

Nat Microbiol· January 2021

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Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs.
Katharine Michelle Ng, Andrés Aranda-Díaz, Carolina Tropini, Matthew Ryan Frankel, William Van Treuren, Bryan Douglas Merrill

Cell Host Microbe· October 2020

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Phase-variable capsular polysaccharides and lipoproteins modify bacteriophage susceptibility in Bacteroides thetaiotaomicron.
Nathan T Porter, Andrew J Hryckowian, Bryan D Merrill, Jaime J Fuentes, Jackson O Gardner

Nat Microbiol· September 2020

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Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions.
Andrew J Hryckowian, Bryan D Merrill, Nathan T Porter, William Van Treuren, Eric J Nelson

Cell Host Microbe· September 2020

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Bystander Phage Therapy: Inducing Host-Associated Bacteria to Produce Antimicrobial Toxins against the Pathogen Using Phages.
T Scott Brady, Christopher P Fajardo, Bryan D Merrill, Jared A Hilton, Kiel A Graves

Antibiotics (Basel)· December 2018

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A PCR-Based Method for Distinguishing between Two Common Beehive Bacteria, Paenibacillus larvae and Brevibacillus laterosporus.
Jordan A Berg, Bryan D Merrill, Donald P Breakwell, Sandra Hope, Julianne H Grose

Appl Environ Microbiol· November 2018

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Complete Genome Sequences of 18 Paenibacillus larvae Phages from the Western United States.
Bryan D Merrill, Christopher P Fajardo, Jared A Hilton, Ashley M Payne, Andy T Ward

Microbiol Resour Announc· October 2018

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Complete Genome Sequences of Paenibacillus larvae Phages BN12, Dragolir, Kiel007, Leyra, Likha, Pagassa, PBL1c, and Tadhana.
Jamison K Walker, Bryan D Merrill, Jordan A Berg, Aziza Dhalai, Douglas W Dingman

Genome Announc· June 2018

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Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota.
Carolina Tropini, Eli Lin Moss, Bryan Douglas Merrill, Katharine Michelle Ng, Steven Kyle Higginbottom

Cell· June 2018

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Bacteriophages as an alternative to conventional antibiotic use for the prevention or treatment of Paenibacillus larvae in honeybee hives.
T Scott Brady, Bryan D Merrill, Jared A Hilton, Ashley M Payne, Michael B Stephenson

J Invertebr Pathol· November 2017

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Genome Sequences of 19 Novel Bacteriophages.
Ian N D Esplin, Jordan A Berg, Ruchira Sharma, Robert C Allen, Daniel K Arens, Bryan D Merrill

Genome Announc· November 2017

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A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites.
Dylan Dodd, Matthew H Spitzer, William Van Treuren, Bryan D Merrill, Andrew J Hryckowian

Nature· November 2017

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Characterization of Five Novel Brevibacillus Bacteriophages and Genomic Comparison of Brevibacillus Phages.
Jordan A Berg, Bryan D Merrill, Justin T Crockett, Kyle P Esplin, Marlee R Evans

PLoS One· July 2017

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DDX6 Represses Aberrant Activation of Interferon-Stimulated Genes.
Jennifer H Lumb, Qin Li, Lauren M Popov, Siyuan Ding, Marie T Keith, Bryan D Merrill

Cell Rep· July 2017

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Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies.
Bryan D Merrill, Andy T Ward, Julianne H Grose, Sandra Hope

BMC Genomics· August 2016

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